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AntonioDeFalco
SCEVAN AntonioDeFalco
25
90
gpl-3.0
4
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...
scrna-seq aneuploidy copynumber single-cell scrna-pipeline clonal-analysis tumor-evolution clonal-evolution microenvironment scrna-seq-analysis tumor-heterogeneity tumor-classification copy-number-variation subclonal-deconvolution subclone-identification
Created 2021-07-05
215 commits to main branch, last one 3 months ago
FunGeST
Palimpsest FunGeST
19
68
unknown
8
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
r nmf genomics clonality driver-events visualization bioinformatics nmf-extraction cancer-genomics cancer-research tumor-evolution somatic-mutations tumor-heterogeneity signature-extraction structural-variation mutational-signatures bioinformatics-analysis structural-variant-signatures
Created 2018-03-12
232 commits to master branch, last one 4 months ago