5 results found Sort:

Starlitnightly
omicverse Starlitnightly
56
458
gpl-3.0
6
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
omics single-cell bulk-rna-seq bioinformatics
Created 2021-03-22
435 commits to master branch, last one 3 days ago
digitalcytometry
ecotyper digitalcytometry
42
183
other
3
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
tumor single-cell bulk-rna-seq deconvolution microenvironment
Created 2021-06-08
74 commits to master branch, last one 7 months ago
bcgsc
RNA-Bloom bcgsc
7
96
other
11
:hibiscus: reference-free transcriptome assembly for short and long reads
rna-seq bulk-rna-seq denovo-assembly pacbio-sequencing bioinformatics-tool nanopore-sequencing single-cell-rna-seq
Created 2018-06-30
1,879 commits to master branch, last one 9 months ago
Danko-Lab
TED Danko-Lab
10
60
unknown
6
a fully Bayesian approach to deconvolve tumor microenvironment
scrna-seq tumor-cells bulk-rna-seq deconvolution stromal-cells tumor-expression expression-profile
Created 2019-12-28
86 commits to master branch, last one 2 years ago
earmingol
cell2cell earmingol
12
56
bsd-3-clause
3
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
rnaseq rna-seq sc-rna-seq single-cell bulk-rna-seq bioinformatics machine-learning single-cell-rna-seq cell-cell-interaction computational-biology cell-cell-communication
Created 2019-04-22
672 commits to master branch, last one 6 months ago