Search Results - RepositoryStats

164

776

gpl-3.0

38

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

10x rnaseq salmon rna-seq sailfish scrna-seq c-plus-plus single-cell quasi-mapping transcriptome bioinformatics quantification gene-expression selective-alignment single-cell-rna-seq rna-seq-quantification

Created 2015-03-19

1,907 commits to master branch, last one 7 months ago

training-material galaxyproject

899

307

mit

53

A collection of Galaxy-related training material

ngs rnaseq chip-seq training tutorial materials usegalaxy proteomics metagenomics hacktoberfest

Created 2015-06-29

28,135 commits to main branch, last one a day ago

zUMIs sdparekh

67

275

gpl-3.0

13

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

dge umi fastq rnaseq rna-seq barcodes pipeline expression single-cell

Created 2017-06-20

291 commits to main branch, last one about a year ago

bioc-refcard mikelove

66

187

unknown

19

Bioconductor cheat sheet

r guide howto rnaseq compbio cheatsheet microarray bioconductor bioinformatics

Created 2012-12-03

96 commits to main branch, last one 2 months ago

rnaseqc getzlab

19

149

other

11

Fast, efficient RNA-Seq metrics for quality control and process optimization

rnaseq rna-seq bioinformatics

Created 2017-08-10

410 commits to master branch, last one 4 days ago

tximport thelovelab

33

136

unknown

15

Transcript quantification import for modular pipelines

deseq2 rnaseq bioconductor

Created 2015-11-18

309 commits to devel branch, last one 7 months ago

RNAlysis GuyTeichman

13

129

mit

4

Analyze your RNA sequencing data without writing a single line of code

rnaseq rna-seq smallrna smallrna-seq bioinformatics gui-application transcriptomics rna-seq-analysis rna-seq-pipeline bioinformatics-tool bioinformatics-analysis bioinformatics-pipeline

Created 2019-06-20

3,398 commits to master branch, last one about a month ago

rnaseq-nf nextflow-io

103

72

apache-2.0

8

A proof of concept of RNAseq pipeline

rnaseq genomics nextflow

Created 2017-07-14

117 commits to master branch, last one 10 days ago

helical helicalAI

7

62

agpl-3.0

5

This repository contains the python package for Helical

vcf data rnaseq biology rna-seq transformer pre-training deep-learning dna-sequences bioinformatics gene-expression neural-networks foundation-models pre-trained-model artificial-intelligence

Created 2024-04-27

830 commits to release branch, last one a day ago

bfx-workshop genome

19

59

unknown

20

A course on genomics and bioinformatics from WU

dna rna scrna rnaseq atacseq biology chipseq dataviz analysis genomics alignment sequencing single-cell bioinformatics

Created 2020-08-19

587 commits to master branch, last one 2 days ago

cell2cell earmingol

12

56

bsd-3-clause

3

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

rnaseq rna-seq sc-rna-seq single-cell bulk-rna-seq bioinformatics machine-learning single-cell-rna-seq cell-cell-interaction computational-biology cell-cell-communication

Created 2019-04-22

672 commits to master branch, last one 6 months ago

DAtest Russel88

9

50

gpl-3.0

8

Compare different differential abundance and expression methods

16s auc otu rnaseq microbiome proteomics metabolomics metagenomics compare-methods relative-abundances marker-gene-analysis false-positive-control differential-expression differential-abundance-methods

Created 2017-06-23

214 commits to master branch, last one 2 years ago

rnavar nf-core

32

37

mit

111

gatk4 RNA variant calling pipeline

rna gatk4 rnaseq nf-core worflow nextflow pipeline workflow variant-calling

Created 2021-05-12

283 commits to master branch, last one 2 years ago