COMBINE-lab / salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Date Created 2015-03-19 (10 years ago)

Commits 1,907 (last one about a year ago)

Stargazers 796 (0 this week)

Watchers 37 (0 this week)

Forks 166

License gpl-3.0

Ranking

RepositoryStats indexes 631,351 repositories, of these COMBINE-lab/salmon is ranked #65,842 (90th percentile) for total stargazers, and #57,780 for total watchers. Github reports the primary language for this repository as C++, for repositories using this language it is ranked #3,562/33,671.

COMBINE-lab/salmon is also tagged with popular topics, for these it's ranked: c-plus-plus (#400/1392), bioinformatics (#43/844)

Other Information

COMBINE-lab/salmon has 3 open pull requests on Github, 70 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 368 open issues and 477 closed issues.

There have been 46 releases, the latest one was published on 2023-03-12 (2 years ago) with the name Salmon v1.10.1.

Homepage URL: https://combine-lab.github.io/salmon

All Topics

10x rnaseq salmon rna-seq sailfish scrna-seq c-plus-plus single-cell quasi-mapping transcriptome bioinformatics quantification gene-expression selective-alignment single-cell-rna-seq rna-seq-quantification

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Recent Commit History

93 commits on the default branch (master) since jan '22

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Languages

The primary language is C++ but there's also others...

updated: 2025-03-23 @ 06:58pm, id: 32549942 / R_kgDOAfCsNg