COMBINE-lab / salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Date Created 2015-03-19 (9 years ago)
Commits 1,907 (last one 11 months ago)
Stargazers 788 (0 this week)
Watchers 38 (0 this week)
Forks 165
License gpl-3.0
Ranking

RepositoryStats indexes 616,225 repositories, of these COMBINE-lab/salmon is ranked #65,543 (89th percentile) for total stargazers, and #57,140 for total watchers. Github reports the primary language for this repository as C++, for repositories using this language it is ranked #3,541/32,944.

COMBINE-lab/salmon is also tagged with popular topics, for these it's ranked: c-plus-plus (#399/1385),  bioinformatics (#42/833)

Other Information

COMBINE-lab/salmon has 3 open pull requests on Github, 70 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 365 open issues and 477 closed issues.

There have been 46 releases, the latest one was published on 2023-03-12 (about a year ago) with the name Salmon v1.10.1.

Homepage URL: https://combine-lab.github.io/salmon

Star History

Github stargazers over time

8008007007006006005005004004003003002002001001000020162016201720172018201820192019202020202021202120222022202320232024202420252025

Watcher History

Github watchers over time, collection started in '23

414140.540.5404039.539.5393938.538.5383820232023Feb '23Feb '23Apr '23Apr '23Jun '23Jun '23Aug '23Aug '23Oct '23Oct '23Dec '23Dec '23Feb '24Feb '24Apr '24Apr '24Jun '24Jun '24Aug '24Aug '24Oct '24Oct '24Dec '24Dec '24Feb '25Feb '25

Recent Commit History

93 commits on the default branch (master) since jan '22

10010090908080707060605050404030302020101000Jul '22Jul '2220232023Jul '23Jul '2320242024Jul '24Jul '2420252025

Yearly Commits

Commits to the default branch (master) per year

60060050050040040030030020020010010000201520152016201620172017201820182019201920202020202120212022202220242024

Issue History

Total Issues
Open Issues
Closed Issues
9009008008007007006006005005004004003003002002001001000020162016201720172018201820192019202020202021202120222022202320232024202420252025

Languages

The primary language is C++ but there's also others...

C++C++CCCMakeCMakeShellShellPythonPythonDockerfileDockerfileNextflowNextflowStandard MLStandard ML

updated: 2025-02-12 @ 11:24pm, id: 32549942 / R_kgDOAfCsNg