6 results found Sort:

snakemake-workflows
rna-seq-star-deseq2 snakemake-workflows
207
333
mit
13
RNA-seq workflow using STAR and DESeq2
deseq2 snakemake sciworkflows reproducibility gene-expression-analysis
Created 2017-10-06
148 commits to master branch, last one 7 months ago
stemangiola
tidybulk stemangiola
25
166
unknown
6
Brings bulk and pseudobulk transcriptomics to the tidyverse
pca gsea pipe tidy tsne edger deseq2 entrez tibble tidy-data tidyverse redundancy ensembl-ids transcripts bioconductor gene-symbols mds-dimensions transcriptomics differential-expression bulk-transcriptional-analyses
Created 2019-08-28
1,483 commits to master branch, last one about a month ago
thelovelab
tximport thelovelab
34
137
unknown
15
Transcript quantification import for modular pipelines
deseq2 rnaseq bioconductor
Created 2015-11-18
309 commits to devel branch, last one 10 months ago
PF2-pasteur-fr
SARTools PF2-pasteur-fr
65
106
unknown
7
Statistical Analysis of RNA-Seq Tools
r edger deseq2 rna-seq differential-analysis reproducible-research
Created 2014-12-09
156 commits to master branch, last one 2 years ago
nf-core
differentialabundance nf-core
42
72
mit
149
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
gsea limma shiny deseq2 nf-core rna-seq atac-seq chip-seq nextflow pipeline workflow microarray differential-abundance differential-expression
Created 2022-10-12
1,105 commits to master branch, last one 8 months ago
complextissue
pytximport complextissue
1
32
gpl-3.0
1
Feature-rich Python implementation of the tximport package for gene count estimation.
rna deseq2 python anndata rna-seq scverse tximport bioinformatics
Created 2024-05-30
115 commits to main branch, last one 2 months ago