8 results found Sort:

YuLab-SMU
clusterProfiler YuLab-SMU
253
1.0k
unknown
45
:bar_chart: A universal enrichment tool for interpreting omics data
go gsea kegg rstats visualization enrichment-analysis
Created 2014-05-31
1,235 commits to devel branch, last one about a month ago
zqfang
GSEApy zqfang
114
548
bsd-3-clause
11
Gene Set Enrichment Analysis in Python
gsea rust python3 enrichment-analysis
Created 2016-01-09
1,203 commits to master branch, last one 16 days ago
broadinstitute
ssGSEA2.0 broadinstitute
79
236
other
13
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
gsea ksea ptm-sea gene-sets ptm-sites ptm-signatures phosphoproteomics ptm-enrichment-analysis pathway-enrichment-analysis
Created 2016-10-13
98 commits to master branch, last one 8 days ago
stemangiola
tidybulk stemangiola
25
164
unknown
6
Brings bulk and pseudobulk transcriptomics to the tidyverse
pca gsea pipe tidy tsne edger deseq2 entrez tibble tidy-data tidyverse redundancy ensembl-ids transcripts bioconductor gene-symbols mds-dimensions transcriptomics differential-expression bulk-transcriptional-analyses
Created 2019-08-28
1,468 commits to master branch, last one 11 days ago
igordot
msigdbr igordot
13
69
other
9
MSigDB gene sets for multiple organisms in a tidy data format
gsea msigdb genomics pathways gene-sets pathway-analysis enrichment-analysis
Created 2018-04-02
59 commits to main branch, last one about a year ago
nf-core
differentialabundance nf-core
32
57
mit
143
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
gsea limma shiny deseq2 nf-core rna-seq atac-seq chip-seq nextflow pipeline workflow microarray differential-abundance differential-expression
Created 2022-10-12
1,105 commits to master branch, last one 4 months ago
JEFworks
liger JEFworks
11
57
gpl-3.0
5
Lightweight Iterative Gene set Enrichment in R
cran gsea rstats gene-sets enrichment bioinformatics pathway-enrichment-analysis
Created 2015-09-26
53 commits to master branch, last one 3 years ago
kerseviciute
aPEAR kerseviciute
10
34
mit
2
Enrichment Networks for Pathway Enrichment Analysis
r gsea plot network pathway clustering enrichment visualization enrichment-analysis
Created 2022-04-30
74 commits to main branch, last one about a year ago