8 results found Sort:

YuLab-SMU
clusterProfiler YuLab-SMU
254
1.0k
unknown
45
:bar_chart: A universal enrichment tool for interpreting omics data
go gsea kegg rstats visualization enrichment-analysis
Created 2014-05-31
1,249 commits to devel branch, last one about a month ago
zqfang
GSEApy zqfang
119
583
bsd-3-clause
11
Gene Set Enrichment Analysis in Python
gsea rust python3 enrichment-analysis
Created 2016-01-09
1,222 commits to master branch, last one 14 days ago
broadinstitute
ssGSEA2.0 broadinstitute
79
258
other
13
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
gsea ksea ptm-sea gene-sets ptm-sites ptm-signatures phosphoproteomics ptm-enrichment-analysis pathway-enrichment-analysis
Created 2016-10-13
101 commits to master branch, last one 2 months ago
stemangiola
tidybulk stemangiola
25
166
unknown
6
Brings bulk and pseudobulk transcriptomics to the tidyverse
pca gsea pipe tidy tsne edger deseq2 entrez tibble tidy-data tidyverse redundancy ensembl-ids transcripts bioconductor gene-symbols mds-dimensions transcriptomics differential-expression bulk-transcriptional-analyses
Created 2019-08-28
1,483 commits to master branch, last one 17 days ago
igordot
msigdbr igordot
14
70
other
9
MSigDB gene sets for multiple organisms in a tidy data format
gsea msigdb genomics pathways gene-sets pathway-analysis enrichment-analysis
Created 2018-04-02
66 commits to main branch, last one 9 days ago
nf-core
differentialabundance nf-core
41
66
mit
150
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
gsea limma shiny deseq2 nf-core rna-seq atac-seq chip-seq nextflow pipeline workflow microarray differential-abundance differential-expression
Created 2022-10-12
1,105 commits to master branch, last one 7 months ago
JEFworks
liger JEFworks
9
57
gpl-3.0
5
Lightweight Iterative Gene set Enrichment in R
cran gsea rstats gene-sets enrichment bioinformatics pathway-enrichment-analysis
Created 2015-09-26
54 commits to master branch, last one 2 months ago
kerseviciute
aPEAR kerseviciute
9
41
mit
2
Enrichment Networks for Pathway Enrichment Analysis
r gsea plot network pathway clustering enrichment visualization enrichment-analysis
Created 2022-04-30
74 commits to main branch, last one about a year ago