8 results found Sort:

YuLab-SMU
clusterProfiler YuLab-SMU
259
1.1k
unknown
44
:bar_chart: A universal enrichment tool for interpreting omics data
go gsea kegg rstats visualization enrichment-analysis
Created 2014-05-31
1,251 commits to devel branch, last one 24 days ago
zqfang
GSEApy zqfang
125
609
bsd-3-clause
11
Gene Set Enrichment Analysis in Python
gsea rust python3 enrichment-analysis
Created 2016-01-09
1,264 commits to master branch, last one 5 days ago
broadinstitute
ssGSEA2.0 broadinstitute
79
270
other
12
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
gsea ksea ptm-sea gene-sets ptm-sites ptm-signatures phosphoproteomics ptm-enrichment-analysis pathway-enrichment-analysis
Created 2016-10-13
101 commits to master branch, last one 5 months ago
stemangiola
tidybulk stemangiola
24
171
unknown
5
Brings bulk and pseudobulk transcriptomics to the tidyverse
pca gsea pipe tidy tsne edger deseq2 entrez tibble tidy-data tidyverse redundancy ensembl-ids transcripts bioconductor gene-symbols mds-dimensions transcriptomics differential-expression bulk-transcriptional-analyses
Created 2019-08-28
1,505 commits to master branch, last one 4 days ago
nf-core
differentialabundance nf-core
44
74
mit
154
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
gsea limma shiny deseq2 nf-core rna-seq atac-seq chip-seq nextflow pipeline workflow microarray differential-abundance differential-expression
Created 2022-10-12
1,105 commits to master branch, last one 10 months ago
igordot
msigdbr igordot
14
73
other
8
MSigDB gene sets for multiple organisms in a tidy data format
gsea msigdb genomics pathways gene-sets pathway-analysis enrichment-analysis
Created 2018-04-02
112 commits to main branch, last one 4 days ago
JEFworks
liger JEFworks
9
57
gpl-3.0
5
Lightweight Iterative Gene set Enrichment in R
cran gsea rstats gene-sets enrichment bioinformatics pathway-enrichment-analysis
Created 2015-09-26
54 commits to master branch, last one 5 months ago
kerseviciute
aPEAR kerseviciute
9
44
mit
2
Enrichment Networks for Pathway Enrichment Analysis
r gsea plot network pathway clustering enrichment visualization enrichment-analysis
Created 2022-04-30
74 commits to main branch, last one about a year ago