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79

241

other

13

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

gsea ksea ptm-sea gene-sets ptm-sites ptm-signatures phosphoproteomics ptm-enrichment-analysis pathway-enrichment-analysis

Created 2016-10-13

101 commits to master branch, last one about a month ago

GSVA rcastelo

41

200

unknown

9

Gene set variation analysis

genomics gene-set-enrichment pathway-enrichment-analysis

Created 2017-09-01

561 commits to devel branch, last one 8 days ago

pathfindR egeulgen

25

183

other

6

pathfindR: Enrichment Analysis Utilizing Active Subnetworks

r pathway enrichment subnetwork active-subnetworks pathway-enrichment-analysis

Created 2017-12-26

1,054 commits to master branch, last one 23 days ago

liger JEFworks

9

57

gpl-3.0

5

Lightweight Iterative Gene set Enrichment in R

cran gsea rstats gene-sets enrichment bioinformatics pathway-enrichment-analysis

Created 2015-09-26

54 commits to master branch, last one about a month ago

CARNIVAL saezlab

29

57

unknown

10

CAusal Reasoning for Network Identification with integer VALue programming in R

r footprints causal-models integer-linear-programming pathway-enrichment-analysis

Created 2017-10-25

3,578 commits to master branch, last one 11 months ago

oncoEnrichR sigven

10

49

mit

6

Explore the cancer relevance of your gene list

cancer genesets proteins tcga-data co-expression crispr-target prioritization cancer-survival report-generator protein-complexes cancer-hallmark-evidence disease-gene-association high-throughput-screening tissue-enrichment-analysis pathway-enrichment-analysis protein-protein-interaction functional-enrichment-analysis

Created 2019-11-21

320 commits to main branch, last one about a month ago