Search Results - RepositoryStats

58

362

bsd-3-clause

11

Reference mapping for single-cell genomics

scrna-seq multiomics single-cell deep-learning batch-correction data-integration human-cell-atlas rna-seq-analysis single-cell-genomics multimodal-deep-learning

Created 2019-08-12

1,176 commits to master branch, last one about a month ago

bambu GoekeLab

24

206

gpl-3.0

6

Reference-guided transcript discovery and quantification for long read RNA-Seq data

r bambu rna-seq nanopore long-reads bioconductor transcriptomics rna-seq-analysis nanopore-sequencing transcript-quantification transcript-reconstruction

Created 2020-02-07

2,175 commits to devel branch, last one 2 months ago

RNAlysis GuyTeichman

13

132

mit

4

Analyze your RNA sequencing data without writing a single line of code

rnaseq rna-seq smallrna smallrna-seq bioinformatics gui-application transcriptomics rna-seq-analysis rna-seq-pipeline bioinformatics-tool bioinformatics-analysis bioinformatics-pipeline

Created 2019-06-20

3,425 commits to master branch, last one 2 months ago

omicsplayground bigomics

36

125

other

4

Visual self-service analytics platform for big omics data.

omics rna-seq genomics rna-seq-analysis genomics-visualization

Created 2019-05-05

8,715 commits to master branch, last one about a month ago

Interactive-3D-Plotting-in-Seurat-3.0.0 Dragonmasterx87

29

121

gpl-3.0

6

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

umap 3dpca 3dtsne 3dumap seurat plotting scrnaseq scrnaseq-data seurat-objects rna-seq-analysis

Created 2019-05-14

65 commits to master branch, last one 2 years ago

Zika-RNAseq-Pipeline MaayanLab

61

102

unknown

21

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

rna-seq notebook pipeline jupyter-notebook rna-seq-analysis bioinformatics-pipeline

Created 2016-04-19

83 commits to master branch, last one 6 years ago

GeneTonic federicomarini

9

78

other

4

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

r gui shiny bioconductor rna-seq-data transcriptome user-friendly gene-expression transcriptomics data-exploration pathway-analysis rna-seq-analysis data-visualization bioconductor-package reproducible-research functional-enrichment-analysis

Created 2019-06-24

1,122 commits to devel branch, last one about a month ago

rail nellore

11

73

other

10

Scalable RNA-seq analysis

emr ipython rail-rna mapreduce alignments rna-seq-analysis

Created 2013-02-12

2,493 commits to master branch, last one 4 years ago

single_cell_portal_core broadinstitute

27

68

bsd-3-clause

16

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

human-cell-atlas rna-seq-analysis single-cell-genomics

Created 2016-03-17

12,738 commits to development branch, last one 2 days ago

pcaExplorer federicomarini

17

56

other

11

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

r shiny bioconductor rna-seq-data transcriptome user-friendly rna-seq-analysis principal-components reproducible-research

Created 2016-03-11

569 commits to devel branch, last one about a month ago

single_cell_portal broadinstitute

25

50

bsd-3-clause

18

Tutorials, workflows, and convenience scripts for Single Cell Portal

human-cell-atlas rna-seq-analysis single-cell-genomics

Created 2016-07-25

590 commits to master branch, last one 3 years ago