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pyCirclize moshi4

47

761

mit

10

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

circos python dataviz genomics matplotlib radar-chart chord-diagram visualization bioinformatics data-visualization microbial-genomics phylogenetic-trees comparative-genomics genomics-visualization

Created 2022-12-17

195 commits to main branch, last one about a month ago

gggenomes thackl

64

594

other

12

A grammar of graphics for comparative genomics

ggplot2 biological-data ggplot-extension comparative-genomics genomics-visualization

Created 2018-02-14

521 commits to master branch, last one 2 months ago

karyoploteR bernatgel

42

298

unknown

7

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

genome rstats bioconductor plotting-in-r bioinformatics data-visualization genomics-visualization

Created 2016-06-07

581 commits to devel branch, last one 10 months ago

pyGenomeViz moshi4

23

277

mit

3

A genome visualization python package for comparative genomics

gff gff3 python genbank synteny genomics matplotlib microbiology visualization bioinformatics microbial-genomics comparative-genomics genomics-visualization

Created 2022-05-20

416 commits to main branch, last one 8 days ago

sequenceserver wurmlab

113

271

agpl-3.0

20

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

ruby blast genomics javascript sequencing hacktoberfest visualization bioinformatics sequence-alignment genomics-visualization

Created 2010-10-01

2,450 commits to master branch, last one 15 days ago

kent ucscGenomeBrowser

89

219

other

24

UCSC Genome Browser source tree. Stable branch: "beta".

bioinformatics data-visualisation computational-biology genomics-visualization

Created 2015-04-09

131,813 commits to master branch, last one 15 hours ago

mixOmics mixOmicsTeam

52

160

unknown

9

Development repository for the Bioconductor package 'mixOmics '

r omics r-pkg rstats genomics r-package r-project bioconductor genomics-data rstats-package multivariate-analysis genomics-visualization multivariate-statistics

Created 2018-10-04

1,139 commits to master branch, last one 3 days ago

Genomic-Interactive-Visualization-Engine Zhong-Lab-UCSD

31

144

apache-2.0

10

Genomic Interactive Visualization Engine

javascript epigenetic-data genomic-interactions genomics-visualization

Created 2013-12-05

1,052 commits to master branch, last one 4 years ago

IGV-snapshot-automator stevekm

50

137

gpl-3.0

7

Script to automatically create and run IGV snapshot batchscripts

igv genomics genomics-visualization

Created 2017-03-04

62 commits to master branch, last one about a year ago

7

122

mit

3

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

genomics genomics-visualization

Created 2020-03-17

119 commits to master branch, last one about a year ago

omicsplayground bigomics

35

118

other

4

Visual self-service analytics platform for big omics data.

omics rna-seq genomics rna-seq-analysis genomics-visualization

Created 2019-05-05

8,387 commits to master branch, last one 7 days ago

HumanIdiogramLibrary RCollins13

11

91

other

2

Resource of human chromosome schematics & images

genetics genomics resources data-visualization genomics-visualization

Created 2018-03-28

29 commits to master branch, last one 2 months ago

11

80

other

4

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

visualization-tools genomics-visualization bioinformatics-visualization

Created 2020-12-02

259 commits to main branch, last one about a year ago

ezancestry arvkevi

11

64

mit

5

Easy genetic ancestry predictions in Python

ancestry genomics genotypes streamlit personal-genomics data-visualization genomics-visualization dimensionality-reduction

Created 2020-05-11

127 commits to main branch, last one 2 months ago

radiator thierrygosselin

23

59

gpl-3.0

13

RADseq Data Exploration, Manipulation and Visualization using R

Created 2017-06-18

637 commits to master branch, last one 5 months ago

7

56

mit

3

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

coverage nextflow genomics-visualization

Created 2019-04-08

138 commits to master branch, last one 2 years ago

20

52

mit

8

create, manage, and upload track hubs for use in the UCSC genome browser

python genomics-visualization

Created 2012-10-30

444 commits to master branch, last one 6 months ago

seqcover brentp

4

50

mit

7

seqcover allows users to view coverage for hundreds of genes and dozens of samples

genomics hacktoberfest genomics-visualization

Created 2019-02-01

117 commits to master branch, last one 3 years ago

HiFi-SVTopo PacificBiosciences

1

25

other

6

Complex structural variant visualization for HiFi sequencing data

hifi genomics bioinformatics data-visualization structural-variants structural-variation genomics-visualization

Created 2024-03-21

77 commits to main branch, last one 9 days ago