16 results found Sort:

YuLab-SMU
ggtree YuLab-SMU
177
871
unknown
38
:christmas_tree:Visualization and annotation of phylogenetic trees
r ggplot2 annotations visualization phylogenetic-trees
Created 2014-12-03
2,097 commits to devel branch, last one 5 months ago
moshi4
pyCirclize moshi4
50
858
mit
11
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
circos python dataviz genomics matplotlib radar-chart chord-diagram visualization bioinformatics data-visualization microbial-genomics phylogenetic-trees comparative-genomics genomics-visualization
Created 2022-12-17
223 commits to main branch, last one 2 months ago
ponnhide
pyCircos ponnhide
65
353
gpl-3.0
10
python Circos
circos python biopython matplotlib circos-plot visualization phylogenetic-trees
Created 2018-01-19
93 commits to master branch, last one 10 months ago
veg
phylotree.js veg
78
174
mit
13
Interactive viewer of phylogenetic trees
d3js vizualisation phylogenetic-trees
Created 2014-10-22
705 commits to master branch, last one 2 months ago
biobakery
phylophlan biobakery
33
139
mit
5
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
tools python biobakery phylogenetic-trees
Created 2020-01-15
487 commits to master branch, last one 5 days ago
cogent3
cogent3 cogent3
67
129
bsd-3-clause
8
Comparative Genomics Toolkit 3
python biology genomics parallel pycogent biopython evolution statistics data-science markov-chain phylogenetics bioinformatics non-stationary signal-processing maximum-likelihood phylogenetic-trees sequence-alignment molecular-evolution biological-sequence-analysis
Created 2019-09-13
10,368 commits to develop branch, last one 5 days ago
YuLab-SMU
treeio YuLab-SMU
26
102
unknown
13
:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output
parser exporter phylogenetic-trees
Created 2016-12-06
597 commits to devel branch, last one 5 months ago
biobakery
graphlan biobakery
28
95
mit
5
High-quality circular representations of taxonomic and phylogenetic trees
tools python biobakery taxonomic-trees phylogenetic-trees circular-visualization
Created 2020-01-17
143 commits to master branch, last one 8 months ago
shawnlaffan
biodiverse shawnlaffan
19
77
gpl-3.0
8
A tool for the spatial analysis of diversity
endemism biodiverse hacktoberfest beta-diversity phylodiversity phylogeography randomisations spatial-analysis species-turnover phylogenetic-trees phylogenetic-diversity
Created 2015-03-27
4,665 commits to master branch, last one 4 months ago
caravagnalab
revolver caravagnalab
25
65
unknown
6
REVOLVER - Repeated Evolution in Cancer
clustering cancer-genomics cancer-evolution transfer-learning phylogenetic-trees
Created 2018-03-20
191 commits to master branch, last one 2 years ago
lczech
genesis lczech
12
61
gpl-3.0
8
A library for working with phylogenetic and population genetic data.
placement c-plus-plus phylogenetics pool-sequencing phylogenetic-data phylogenetic-trees population-genetics evolutionary-placement phylogenetic-placements
Created 2014-10-24
4,138 commits to master branch, last one 12 days ago
vibbits
phyd3 vibbits
18
56
mit
4
Phylogenetic tree viewer based on D3.js
d3js visualization phylogenetic-trees
Created 2016-10-18
75 commits to master branch, last one 8 months ago
vinuesa
get_phylomarkers vinuesa
9
55
other
4
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
r bash perl markers genomics pipeline core-genome orthologues microbiology phylogenetics phylogenomics recombination species-trees codon-alignment clock-hypothesis maximum-likelihood phylogenetic-trees population-genetics species-delimitation phylogenomics-pipeline
Created 2017-05-12
927 commits to master branch, last one 8 months ago
moshi4
phyTreeViz moshi4
0
48
mit
2
Simple phylogenetic tree visualization python package for phylogenetic analysis
python biopython matplotlib visualization bioinformatics phylogenetic-trees
Created 2023-09-07
9 commits to main branch, last one about a year ago
agmcfarland
r_phylogenetics_worshop agmcfarland
10
46
mit
4
Using ggtree to build phylogenetic trees
workshop visualization phylogenetic-trees
Created 2021-08-09
28 commits to main branch, last one 5 months ago
moshi4
CafePlotter moshi4
3
29
mit
3
A tool for plotting CAFE5 gene family expansion/contraction result
python evolution matplotlib phylogenetics phylogenomics bioinformatics phylogenetic-trees molecular-evolution
Created 2023-03-03
16 commits to main branch, last one about a year ago