16 results found Sort:

YuLab-SMU
ggtree YuLab-SMU
173
849
unknown
38
:christmas_tree:Visualization and annotation of phylogenetic trees
r ggplot2 annotations visualization phylogenetic-trees
Created 2014-12-03
2,097 commits to devel branch, last one about a month ago
moshi4
pyCirclize moshi4
50
790
mit
10
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
circos python dataviz genomics matplotlib radar-chart chord-diagram visualization bioinformatics data-visualization microbial-genomics phylogenetic-trees comparative-genomics genomics-visualization
Created 2022-12-17
204 commits to main branch, last one 22 hours ago
ponnhide
pyCircos ponnhide
65
342
gpl-3.0
11
python Circos
circos python biopython matplotlib circos-plot visualization phylogenetic-trees
Created 2018-01-19
93 commits to master branch, last one 6 months ago
veg
phylotree.js veg
78
170
mit
13
Interactive viewer of phylogenetic trees
d3js vizualisation phylogenetic-trees
Created 2014-10-22
701 commits to master branch, last one 11 months ago
biobakery
phylophlan biobakery
33
129
mit
6
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
tools python biobakery phylogenetic-trees
Created 2020-01-15
483 commits to master branch, last one about a month ago
cogent3
cogent3 cogent3
54
117
bsd-3-clause
12
Comparative Genomics Toolkit 3
python biology genomics parallel pycogent biopython evolution statistics data-science markov-chain phylogenetics bioinformatics non-stationary signal-processing maximum-likelihood phylogenetic-trees sequence-alignment molecular-evolution biological-sequence-analysis
Created 2019-09-13
10,156 commits to develop branch, last one 2 days ago
YuLab-SMU
treeio YuLab-SMU
26
97
unknown
13
:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output
parser exporter phylogenetic-trees
Created 2016-12-06
597 commits to devel branch, last one about a month ago
biobakery
graphlan biobakery
27
92
mit
6
High-quality circular representations of taxonomic and phylogenetic trees
tools python biobakery taxonomic-trees phylogenetic-trees circular-visualization
Created 2020-01-17
143 commits to master branch, last one 4 months ago
shawnlaffan
biodiverse shawnlaffan
19
75
gpl-3.0
9
A tool for the spatial analysis of diversity
endemism biodiverse hacktoberfest beta-diversity phylodiversity phylogeography randomisations spatial-analysis species-turnover phylogenetic-trees phylogenetic-diversity
Created 2015-03-27
4,665 commits to master branch, last one 26 days ago
caravagnalab
revolver caravagnalab
25
65
unknown
7
REVOLVER - Repeated Evolution in Cancer
clustering cancer-genomics cancer-evolution transfer-learning phylogenetic-trees
Created 2018-03-20
191 commits to master branch, last one 2 years ago
lczech
genesis lczech
12
58
gpl-3.0
9
A library for working with phylogenetic and population genetic data.
placement c-plus-plus phylogenetics pool-sequencing phylogenetic-data phylogenetic-trees population-genetics evolutionary-placement phylogenetic-placements
Created 2014-10-24
4,028 commits to master branch, last one 4 days ago
vibbits
phyd3 vibbits
18
56
mit
5
Phylogenetic tree viewer based on D3.js
d3js visualization phylogenetic-trees
Created 2016-10-18
75 commits to master branch, last one 4 months ago
vinuesa
get_phylomarkers vinuesa
8
54
other
4
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
r bash perl markers genomics pipeline core-genome orthologues microbiology phylogenetics phylogenomics recombination species-trees codon-alignment clock-hypothesis maximum-likelihood phylogenetic-trees population-genetics species-delimitation phylogenomics-pipeline
Created 2017-05-12
927 commits to master branch, last one 4 months ago
agmcfarland
r_phylogenetics_worshop agmcfarland
10
45
mit
4
Using ggtree to build phylogenetic trees
workshop visualization phylogenetic-trees
Created 2021-08-09
28 commits to main branch, last one about a month ago
moshi4
phyTreeViz moshi4
0
43
mit
2
Simple phylogenetic tree visualization python package for phylogenetic analysis
python biopython matplotlib visualization bioinformatics phylogenetic-trees
Created 2023-09-07
9 commits to main branch, last one 8 months ago
moshi4
CafePlotter moshi4
3
26
mit
3
A tool for plotting CAFE5 gene family expansion/contraction result
python evolution matplotlib phylogenetics phylogenomics bioinformatics phylogenetic-trees molecular-evolution
Created 2023-03-03
16 commits to main branch, last one about a year ago