10 results found Sort:

zhanghao-njmu
SCP zhanghao-njmu
68
318
gpl-3.0
8
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scanpy seurat anndata scrna-seq shiny-app shinyapps scatac-seq shiny-apps single-cell scrna-pipeline seurat-objects single-cell-omics scrna-seq-analysis single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-pipeline single-cell-sequencing
Created 2022-03-30
308 commits to main branch, last one 7 months ago
ZJUFanLab
scCATCH ZJUFanLab
36
205
gpl-3.0
4
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
seurat rna-seq sequencing single-cell cell-markers marker-genes transcriptome transcriptomics cluster-annotation
Created 2019-08-06
118 commits to master branch, last one about a year ago
ChristophGeske
ARCoreInsideOutTrackingGearVr ChristophGeske
29
190
mit
29
Inside Out Positional Tracking (6DoF) for GearVR/Cardboard/Daydream using ARCore v1.6.0
6dof slam phone arcore gearvr mobile seurat gear-vr daydream cardboard mobile-vr 6dof-tracking arcore-device google-arcore head-tracking marker-tracking position-tracking inside-out-tracking google-play-services-for-ar
Created 2018-01-28
553 commits to master branch, last one 2 years ago
samuel-marsh
scCustomize samuel-marsh
19
181
gpl-3.0
3
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
seurat ggplot2 scrna-seq single-cell customization visualization single-cell-rna-seq single-cell-genomics
Created 2021-09-29
2,374 commits to master branch, last one 3 months ago
stemangiola
tidyseurat stemangiola
12
144
unknown
10
Seurat meets tidyverse. The best of both worlds.
pca sct tsne umap dplyr purrr tidyr seurat tibble ggplot2 tidyverse single-cell transcripts normalization single-cell-rna-seq
Created 2020-08-23
406 commits to master branch, last one 3 months ago
enblacar
SCpubr enblacar
10
136
gpl-3.0
6
Generate high quality, publication ready visualizations for single cell transcriptomics data.
r rstats seurat ggplot2 single-cell visualization data-visualization single-cell-rna-seq single-cell-genomics publication-quality-plots
Created 2021-12-21
706 commits to main branch, last one 4 months ago
basilkhuder
Seurat-to-RNA-Velocity basilkhuder
26
127
unknown
6
A guide to using a Seurat object in conjunction with RNA Velocity
scvelo seurat anndata bustools kallisto velocyto kb-python rna-velocity integrating-loom kallisto-bustools
Created 2020-01-08
99 commits to master branch, last one 2 years ago
interactivereport
cellxgene_VIP interactivereport
43
124
mit
6
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also pe...
svg scanpy seurat cellxgene scrna-seq cellxgene-vip visualization publication-quality-plots
Created 2020-05-06
694 commits to master branch, last one 5 days ago
Dragonmasterx87
Interactive-3D-Plotting-in-Seurat-3.0.0 Dragonmasterx87
27
110
gpl-3.0
7
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
umap 3dpca 3dtsne 3dumap seurat plotting scrnaseq scrnaseq-data seurat-objects rna-seq-analysis
Created 2019-05-14
65 commits to master branch, last one about a year ago
lilab-bcb
cirrocumulus lilab-bcb
12
65
bsd-3-clause
7
Bring your single-cell data to life
10x webgl scanpy seurat anndata spatial scrna-seq smartseq2 single-cell visualization bioinformatics transcriptomics data-visualization
Created 2019-10-04
2,105 commits to main branch, last one 9 months ago