Search Results - RepositoryStats

88

410

gpl-3.0

8

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

scanpy seurat anndata scrna-seq shiny-app shinyapps scatac-seq shiny-apps single-cell scrna-pipeline seurat-objects single-cell-omics scrna-seq-analysis single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-pipeline single-cell-sequencing

Created 2022-03-30

308 commits to main branch, last one about a year ago

scCustomize samuel-marsh

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232

gpl-3.0

3

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

seurat ggplot2 scrna-seq single-cell customization visualization single-cell-rna-seq single-cell-genomics

Created 2021-09-29

3,101 commits to master branch, last one 6 days ago

scCATCH ZJUFanLab

38

220

gpl-3.0

5

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

seurat rna-seq sequencing single-cell cell-markers marker-genes transcriptome transcriptomics cluster-annotation

Created 2019-08-06

118 commits to master branch, last one about a year ago

ARCoreInsideOutTrackingGearVr ChristophGeske

30

194

mit

29

Inside Out Positional Tracking (6DoF) for GearVR/Cardboard/Daydream using ARCore v1.6.0

6dof slam phone arcore gearvr mobile seurat gear-vr daydream cardboard mobile-vr 6dof-tracking arcore-device google-arcore head-tracking marker-tracking position-tracking inside-out-tracking google-play-services-for-ar

Created 2018-01-28

555 commits to master branch, last one 2 months ago

SCpubr enblacar

13

164

gpl-3.0

6

Generate high quality, publication ready visualizations for single cell transcriptomics data.

r rstats seurat ggplot2 single-cell visualization data-visualization single-cell-rna-seq single-cell-genomics publication-quality-plots

Created 2021-12-21

734 commits to main branch, last one 4 months ago

tidyseurat stemangiola

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159

unknown

9

Seurat meets tidyverse. The best of both worlds.

pca sct tsne umap dplyr purrr tidyr seurat tibble ggplot2 tidyverse single-cell transcripts normalization single-cell-rna-seq

Created 2020-08-23

414 commits to master branch, last one 5 months ago

ceLLama CelVoxes

6

144

unknown

4

Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports

llm scanpy seurat rna-seq celltype single-cell large-language-models

Created 2024-06-16

30 commits to main branch, last one 2 months ago

cellxgene_VIP interactivereport

47

135

mit

6

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also pe...

svg scanpy seurat cellxgene scrna-seq cellxgene-vip visualization publication-quality-plots

Created 2020-05-06

694 commits to master branch, last one 6 months ago