7 results found Sort:

wheaton5
souporcell wheaton5
46
174
mit
11
Clustering scRNAseq by genotypes
genomics scrnaseq scrna-seq bioinformatics scrna-seq-analysis computational-biology
Created 2019-03-16
228 commits to master branch, last one 4 months ago
theislab
kBET theislab
23
156
apache-2.0
8
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
scrnaseq data-science batch-effects quantification
Created 2016-12-06
168 commits to master branch, last one 11 months ago
Dragonmasterx87
Interactive-3D-Plotting-in-Seurat-3.0.0 Dragonmasterx87
29
118
gpl-3.0
7
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
umap 3dpca 3dtsne 3dumap seurat plotting scrnaseq scrnaseq-data seurat-objects rna-seq-analysis
Created 2019-05-14
65 commits to master branch, last one about a year ago
crazyhottommy
scclusteval crazyhottommy
12
87
other
7
Single Cell Cluster Evaluation
rstats ggplot2 scrnaseq clustering
Created 2018-11-30
69 commits to master branch, last one 3 years ago
FelixTheStudent
cellpypes FelixTheStudent
3
51
gpl-3.0
1
Cell type pipes for R
scrnaseq celltype-annotation single-cell-rna-seq classification-algorithm
Created 2021-06-08
209 commits to main branch, last one 11 months ago
guokai8
scGSVA guokai8
4
51
gpl-3.0
2
scGSVA: Perform GSVA for single cell RNA seq
gsva scrnaseq
Created 2021-07-14
204 commits to main branch, last one about a month ago
LouisFaure
scFates LouisFaure
3
50
bsd-3-clause
2
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
scrnaseq elpigraph pseudotime tree-inference
Created 2020-06-29
561 commits to master branch, last one 2 months ago