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R toolkit for single cell genomics
Created
2015-05-20
8,541 commits to master branch, last one about a month ago
Deep probabilistic analysis of single-cell and spatial omics data
Created
2017-09-06
4,014 commits to main branch, last one a day ago
Reference mapping for single-cell genomics
Created
2019-08-12
1,175 commits to master branch, last one 24 days ago
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
Created
2017-12-06
3,225 commits to devel branch, last one 27 days ago
starfish: unified pipelines for image-based transcriptomics
Created
2017-05-26
1,432 commits to master branch, last one 7 months ago
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
Created
2016-01-28
363 commits to master branch, last one 4 years ago
Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
Created
2022-09-12
531 commits to master branch, last one 18 days ago
The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs...
Created
2021-10-15
339 commits to main branch, last one 2 months ago
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
Created
2017-08-17
356 commits to master branch, last one about a month ago
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
Created
2016-03-17
12,050 commits to development branch, last one 4 days ago
Clone of the Bioconductor repository for the DropletUtils package.
Created
2017-12-18
489 commits to devel branch, last one 3 months ago
Bayesian MCMC matrix factorization algorithm
Created
2015-12-18
1,656 commits to master branch, last one 11 days ago
Access and Format Single-cell RNA-seq Datasets from Public Resources
Created
2023-07-12
82 commits to main branch, last one about a month ago