Search Results - RepositoryStats

dorothea saezlab

27

137

gpl-3.0

15

R package to access DoRothEA's regulons

regulons tf-activities gene-expression functional-analysis bioconductor-package transcription-factor

Created 2017-03-27

282 commits to master branch, last one 10 months ago

PureCN lima1

32

130

artistic-2.0

7

Copy number calling and variant classification using targeted short read sequencing

loh copy-number tumor-purity cell-free-dna tumor-heterogeneity bioconductor-package tumor-mutational-burden

Created 2017-08-04

1,285 commits to devel branch, last one about a month ago

curatedMetagenomicData waldronlab

28

128

artistic-2.0

13

Curated Metagenomic Data of the Human Microbiome

bioconductor experimenthub bioconductor-package

Created 2016-05-06

1,096 commits to devel branch, last one 2 months ago

SC3 hemberg-lab

55

121

gpl-3.0

11

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

human-cell-atlas single-cell-rna-seq bioconductor-package

Created 2016-01-28

363 commits to master branch, last one 5 years ago

BASiCS catavallejos

17

84

unknown

7

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

r rcpp bayesian scrna-seq single-cell rcpparmadillo gene-expression bioconductor-package

Created 2015-05-19

1,003 commits to devel branch, last one 9 months ago

MungeSumstats Al-Murphy

15

78

unknown

4

Rapid standardisation and quality control of GWAS or QTL summary statistics

r qtl gwas genomics r-package vcf-files database-api bioinformatics standardisation summary-statistics bioconductor-package

Created 2021-03-30

417 commits to master branch, last one 12 days ago

GeneTonic federicomarini

8

76

other

6

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

r gui shiny bioconductor rna-seq-data transcriptome user-friendly gene-expression transcriptomics data-exploration pathway-analysis rna-seq-analysis data-visualization bioconductor-package reproducible-research functional-enrichment-analysis

Created 2019-06-24

1,099 commits to devel branch, last one 11 days ago

MultiAssayExperiment waldronlab

33

70

unknown

16

Bioconductor package for management of multi-assay data

r tcga genomics nci-itcr bioconductor bioconductor-package

Created 2013-07-22

1,744 commits to devel branch, last one 7 days ago

SingleCellExperiment drisso

18

68

unknown

10

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

bioconductor human-cell-atlas single-cell-rna-seq bioconductor-package

Created 2017-08-17

359 commits to master branch, last one about a month ago

BiocParallel Bioconductor

29

67

unknown

19

Bioconductor facilities for parallel evaluation

core-package bioconductor-package

Created 2012-11-14

762 commits to devel branch, last one 2 months ago

Biostrings Bioconductor

16

58

unknown

16

Efficient manipulation of biological strings

core-package bioconductor-package

Created 2017-08-24

2,311 commits to devel branch, last one 16 days ago

DropletUtils MarioniLab

27

56

unknown

12

Clone of the Bioconductor repository for the DropletUtils package.

human-cell-atlas single-cell-rna-seq bioconductor-package

Created 2017-12-18

505 commits to devel branch, last one 20 days ago

lefser waldronlab

5

51

unknown

9

R implementation of the LEfSe method

bioconductor-package

Created 2020-07-23

310 commits to devel branch, last one 14 days ago

orthogene neurogenomics

4

41

unknown

2

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

r genes genomics r-package ontologies biomedicine bioconductor animal-models bioinformatics bioconductor-package comparative-genomics evolutionary-biology translational-research

Created 2021-07-27

282 commits to main branch, last one about a year ago