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CellChat sqjin

139

606

gpl-3.0

13

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

microenvironment single-cell-analysis cell-cell-interaction cell-cell-communication

This repository has been archived (exclude archived)

Created 2020-04-27

270 commits to master branch, last one 7 months ago

CellChat jinworks

24

204

gpl-3.0

2

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

microenvironment single-cell-analysis cell-cell-interaction cell-cell-communication spatial-transcriptomics

Created 2023-11-05

105 commits to main branch, last one 10 days ago

ncem theislab

13

100

bsd-3-clause

6

Learning cell communication from spatial graphs of cells

glm gnn cvae scanpy squidpy tensorflow cell-cell-interaction encoder-decoder-model cell-cell-communication

Created 2021-05-04

412 commits to main branch, last one about a year ago

multinichenetr saeyslab

14

96

gpl-3.0

3

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

scrna-seq single-cell ligand-target ligand-receptor systems-biology single-cell-rna-seq cell-cell-interaction cell-cell-communication differential-expression intercellular-signaling intercellular-communication ligand-receptor-interaction

Created 2021-02-16

130 commits to main branch, last one 19 days ago

cell2cell earmingol

11

53

bsd-3-clause

3

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

rnaseq rna-seq sc-rna-seq single-cell bulk-rna-seq bioinformatics machine-learning single-cell-rna-seq cell-cell-interaction computational-biology cell-cell-communication

Created 2019-04-22

672 commits to master branch, last one about a month ago

SpaTalk ZJUFanLab

17

53

gpl-3.0

2

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

single-cell graph-network knowledge-graph cell-cell-interaction spatial-data-analysis cell-cell-communication spatial-transcriptomics ligand-receptor-interaction spatially-resolved-transcriptomics

Created 2022-03-29

166 commits to main branch, last one 15 days ago