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119

501

unknown

14

NicheNet: predict active ligand-target links between interacting cells

rna-seq ligand-target gene-expression ligand-receptor data-integration network-inference single-cell-omics single-cell-rna-seq cell-cell-communication intercellular-communication

Created 2018-02-05

495 commits to master branch, last one 3 months ago

liana saezlab

31

185

gpl-3.0

9

LIANA: a LIgand-receptor ANalysis frAmework

liana cellchat omnipath cellphonedb ligand-receptor cell-cell-communication

Created 2021-01-27

865 commits to master branch, last one 4 months ago

liana-py saezlab

22

174

gpl-3.0

3

LIANA+: an all-in-one framework for cell-cell communication

python spatial single-cell spatialomics ligand-receptor single-cell-rna-seq cell-cell-communication

Created 2022-09-22

810 commits to main branch, last one 3 months ago

multinichenetr saeyslab

14

129

gpl-3.0

3

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

scrna-seq single-cell ligand-target ligand-receptor systems-biology single-cell-rna-seq cell-cell-interaction cell-cell-communication differential-expression intercellular-signaling intercellular-communication ligand-receptor-interaction

Created 2021-02-16

135 commits to main branch, last one about a month ago

DrugHIVE jssweller

9

66

other

3

DrugHIVE: Structure-based drug design with a deep hierarchical generative model

python pytorch drug-design generative-ai drug-discovery ligand-receptor structure-based generative-model protein-structure hierarchical-models ligand-receptor-interaction structure-based-drug-design

Created 2023-10-06

7 commits to main branch, last one 2 months ago