6 results found Sort:

pachterlab
gget pachterlab
75
1.0k
bsd-2-clause
8
🧬 gget enables efficient querying of genomic reference databases
gget ncbi blast archs4 enrichr ensembl rna-seq uniprot genomics alphafold databases reference alphafold2 proteomics transcriptomics enrichment-analysis
Created 2022-05-04
2,885 commits to main branch, last one 3 days ago
vanheeringen-lab
genomepy vanheeringen-lab
38
386
mit
5
genes and genomes at your fingertips
ncbi ucsc genome python ensembl bioconda
Created 2016-12-16
770 commits to master branch, last one 3 months ago
tariqdaouda
pyGeno tariqdaouda
49
319
apache-2.0
24
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed gtf vcf snps cancer genome biology ensembl genomes medical genomics medicine csv-parser proteomics bioinformatics cancer-genomes genome-browser cancer-genomics genome-annotation genome-sequencing
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
Ensembl
ensembl-hive Ensembl
28
53
apache-2.0
14
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
perl ehive mysql slurm docker python sqlite ensembl pipeline postgresql high-performance-computing workflow-management-system
Created 2013-12-05
4,868 commits to main branch, last one 2 months ago
Ensembl
ensembl-compara Ensembl
69
52
apache-2.0
12
The Ensembl Compara Perl API and SQL schema
api perl mysql ensembl database bioinformatics comparative-genomics
Created 2013-11-25
20,664 commits to release/113 branch, last one 5 months ago
noamteyssier
ggetrs noamteyssier
3
34
mit
2
Efficient querying of biological databases
rust enrichr ensembl uniprot bioinformatics command-line-tool
Created 2022-09-08
184 commits to main branch, last one 4 months ago