5 results found Sort:

pachterlab
gget pachterlab
69
882
bsd-2-clause
11
🧬 gget enables efficient querying of genomic reference databases
gget ncbi blast archs4 enrichr ensembl uniprot alphafold databases reference alphafold2 enrichment-analysis
Created 2022-05-04
2,355 commits to main branch, last one a day ago
vanheeringen-lab
genomepy vanheeringen-lab
36
366
mit
6
genes and genomes at your fingertips
ncbi ucsc genome python ensembl bioconda
Created 2016-12-16
768 commits to master branch, last one about a year ago
tariqdaouda
pyGeno tariqdaouda
52
308
apache-2.0
25
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed gtf vcf snps cancer genome biology ensembl genomes medical genomics medicine csv-parser proteomics bioinformatics cancer-genomes genome-browser cancer-genomics genome-annotation genome-sequencing
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
Ensembl
ensembl-hive Ensembl
28
50
apache-2.0
16
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
lsf sge java perl ehive mysql slurm docker pbspro python sqlite ensembl pbs-pro htcondor pipeline postgresql docker-swarm high-performance-computing workflow-management-system
Created 2013-12-05
4,782 commits to version/2.6 branch, last one 5 months ago
Ensembl
ensembl-compara Ensembl
69
50
apache-2.0
13
The Ensembl Compara Perl API and SQL schema
api perl mysql ensembl database bioinformatics comparative-genomics
Created 2013-11-25
20,346 commits to release/112 branch, last one about a month ago