18 results found Sort:

228
859
unknown
48
:zap: :aquarius: Rapid prokaryotic genome annotation
Created 2014-03-26
316 commits to master branch, last one 4 years ago
58
474
gpl-3.0
14
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Created 2020-01-15
1,013 commits to main branch, last one 3 days ago
198
464
other
52
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Created 2009-01-16
8,129 commits to master branch, last one about a year ago
74
359
gpl-3.0
10
Extensive de-novo TE Annotator
Created 2019-05-23
878 commits to master branch, last one 25 days ago
89
330
bsd-2-clause
16
Eukaryotic Genome Annotation Pipeline
Created 2015-12-18
1,513 commits to master branch, last one 12 days ago
50
317
apache-2.0
25
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
29
217
unknown
14
Genomic Data Retrieval with R
Created 2014-08-05
2,417 commits to master branch, last one about a month ago
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Created 2017-05-18
262 commits to master branch, last one 26 days ago
22
165
mit
9
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or l...
Created 2020-07-07
272 commits to master branch, last one 7 months ago
20
152
other
6
Earl Grey: A fully automated TE curation and annotation pipeline
Created 2021-09-30
630 commits to main branch, last one 6 days ago
4
89
gpl-3.0
3
High-precision TE Annotator
Created 2022-12-22
455 commits to master branch, last one 13 days ago
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
Created 2023-09-10
456 commits to main branch, last one 2 months ago
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69
unknown
5
convert various features into a GFF-like file for use in genome browsers
Created 2015-04-02
214 commits to master branch, last one about a year ago
A fully automated gene annotator from RNA-Seq expression data
Created 2021-01-08
189 commits to master branch, last one about a year ago
17
56
unknown
24
Read Assembly and Annotation Pipeline Tool
Created 2020-01-30
153 commits to master branch, last one 4 months ago
A parallel wrapper for LTR_FINDER
Created 2019-05-26
31 commits to master branch, last one about a year ago
A set of workflows written in Nextflow for Genome Annotation.
Created 2020-01-31
397 commits to master branch, last one about a year ago
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Created 2021-09-13
812 commits to main branch, last one about a month ago