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:zap: :aquarius: Rapid prokaryotic genome annotation
Created
2014-03-26
316 commits to master branch, last one 4 years ago
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Created
2009-01-16
8,129 commits to master branch, last one about a year ago
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Created
2020-01-15
1,001 commits to main branch, last one 7 days ago
Extensive de-novo TE Annotator
Created
2019-05-23
785 commits to master branch, last one 2 months ago
Eukaryotic Genome Annotation Pipeline
Created
2015-12-18
1,511 commits to master branch, last one 3 months ago
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created
2014-09-26
532 commits to bloody branch, last one 4 years ago
Genomic Data Retrieval with R
Created
2014-08-05
2,415 commits to master branch, last one 4 months ago
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Created
2017-05-18
261 commits to master branch, last one 3 months ago
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or l...
Created
2020-07-07
272 commits to master branch, last one 5 months ago
Earl Grey: A fully automated TE curation and annotation pipeline
Created
2021-09-30
580 commits to main branch, last one 25 days ago
convert various features into a GFF-like file for use in genome browsers
Created
2015-04-02
214 commits to master branch, last one about a year ago
High-precision TE Annotator
Created
2022-12-22
329 commits to master branch, last one 9 days ago
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
Created
2023-09-10
455 commits to main branch, last one about a month ago
A fully automated gene annotator from RNA-Seq expression data
Created
2021-01-08
189 commits to master branch, last one about a year ago
Read Assembly and Annotation Pipeline Tool
Created
2020-01-30
153 commits to master branch, last one about a month ago
A parallel wrapper for LTR_FINDER
Created
2019-05-26
31 commits to master branch, last one 10 months ago
A set of workflows written in Nextflow for Genome Annotation.
Created
2020-01-31
397 commits to master branch, last one 10 months ago
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Created
2021-09-13
804 commits to main branch, last one 2 months ago