15 results found Sort:

tseemann
prokka tseemann
219
775
unknown
47
:zap: :aquarius: Rapid prokaryotic genome annotation
gene-finding bacterial-genomes genome-annotation functional-assignment
Created 2014-03-26
316 commits to master branch, last one 3 years ago
GMOD
jbrowse GMOD
199
459
other
52
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
biology genomics bioinformatics genome-browser genome-annotation protein-annotation
Created 2009-01-16
8,129 commits to master branch, last one about a year ago
oschwengers
bakta oschwengers
44
411
gpl-3.0
14
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
mag bacteria plasmids annotation bioinformatics bacterial-genomes genome-annotation microbial-genomics metagenome-assembled-genomes
Created 2020-01-15
929 commits to main branch, last one 14 days ago
oushujun
EDTA oushujun
70
315
gpl-3.0
9
Extensive de-novo TE Annotator
pipeline benchmarking genome-annotation transposable-elements
Created 2019-05-23
759 commits to master branch, last one 4 months ago
tariqdaouda
pyGeno tariqdaouda
52
308
apache-2.0
25
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed gtf vcf snps cancer genome biology ensembl genomes medical genomics medicine csv-parser proteomics bioinformatics cancer-genomes genome-browser cancer-genomics genome-annotation genome-sequencing
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
nextgenusfs
funannotate nextgenusfs
82
300
bsd-2-clause
16
Eukaryotic Genome Annotation Pipeline
gene-models ncbi-submission genome-annotation comparative-genomics
Created 2015-12-18
1,504 commits to master branch, last one 3 months ago
ropensci
biomartr ropensci
29
209
unknown
14
Genomic Data Retrieval with R
r genome rstats biomart genomics proteome r-package metagenomics ncbi-genbank meta-analysis peer-reviewed ensembl-servers genome-retrieval genome-annotation sequenced-genomes database-retrieval
Created 2014-08-05
2,413 commits to master branch, last one 6 months ago
oushujun
LTR_retriever oushujun
40
174
gpl-3.0
7
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
lai ltr-retriever genome-assembly genome-annotation ltr-retrotransposons
Created 2017-05-18
254 commits to master branch, last one about a month ago
hillerlab
TOGA hillerlab
22
138
mit
9
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or l...
genomics bioinformatics genome-annotation bioinformatics-pipeline
Created 2020-07-07
272 commits to master branch, last one 8 days ago
TobyBaril
EarlGrey TobyBaril
18
125
other
5
Earl Grey: A fully automated TE curation and annotation pipeline
genomics bioinformatics te-annotations genome-analysis genome-annotation transposable-elements
Created 2021-09-30
490 commits to main branch, last one a day ago
wrf
genomeGTFtools wrf
26
65
unknown
5
convert various features into a GFF-like file for use in genome browsers
gff jbrowse genomics visualization genome-browsers genome-annotation
Created 2015-04-02
214 commits to master branch, last one 7 months ago
ncbi
rapt ncbi
17
53
unknown
24
Read Assembly and Annotation Pipeline Tool
ngs pgap skesa genome-annotation annotation-pipeline
Created 2020-01-30
151 commits to master branch, last one about a month ago
sagnikbanerjee15
Finder sagnikbanerjee15
14
51
mit
5
A fully automated gene annotator from RNA-Seq expression data
gtf finder rna-seq gene-models transcripts predict-genes bioinformatics gene-annotations genome-annotation protein-sequences changepoint-detection bioinformatics-pipeline gene-annotation-pipeline
Created 2021-01-08
189 commits to master branch, last one 12 months ago
NBISweden
pipelines-nextflow NBISweden
18
42
gpl-3.0
38
A set of workflows written in Nextflow for Genome Annotation.
nextflow workflow genome-annotation
Created 2020-01-31
397 commits to master branch, last one 5 months ago
Kuanhao-Chao
LiftOn Kuanhao-Chao
0
41
gpl-3.0
1
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
lifton homolgy liftover genome-annotation t2tchm13-annotation protein-maximization-algorithm
Created 2023-09-10
444 commits to main branch, last one 18 days ago