6 results found Sort:

bebop
poly bebop
68
658
mit
12
A Go package for engineering organisms.
go dna mash fasta synbio genbank plasmids alignment dna-barcode golden-gate dna-barcoding primer-design bioengineering bioinformatics codon-optimizer sequence-hashing molecular-biology synthetic-biology genetic-engineering computational-biology
Created 2020-05-29
487 commits to main branch, last one about a month ago
oschwengers
bakta oschwengers
44
411
gpl-3.0
14
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
mag bacteria plasmids annotation bioinformatics bacterial-genomes genome-annotation microbial-genomics metagenome-assembled-genomes
Created 2020-01-15
929 commits to main branch, last one 12 days ago
phac-nml
mob-suite phac-nml
32
109
apache-2.0
12
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
typing plasmids assemblies clustering host-range
Created 2018-02-09
330 commits to master branch, last one 23 days ago
oschwengers
platon oschwengers
15
101
gpl-3.0
6
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
ngs wgs contigs assembly bacteria plasmids microbiology bioinformatics
Created 2019-06-19
195 commits to main branch, last one 9 months ago
smaegol
PlasFlow smaegol
28
94
gpl-3.0
8
Software for prediction of plasmid sequences in metagenomic assemblies
fasta contigs plasmid plasflow plasmids metagenome prediction tensorflow metagenomes classification plasmid-sequences metagenome-assembly
Created 2017-01-12
89 commits to master branch, last one 2 years ago
pianpianyouche
plascad pianpianyouche
11
41
mit
1
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
plasmids antibiotic-resistance
Created 2020-09-15
67 commits to master branch, last one 3 years ago