Search Results - RepositoryStats

44

411

gpl-3.0

14

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

mag bacteria plasmids annotation bioinformatics bacterial-genomes genome-annotation microbial-genomics metagenome-assembled-genomes

Created 2020-01-15

929 commits to main branch, last one 15 days ago

DRAM WrightonLabCSU

50

239

gpl-3.0

6

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

genomics annotation microbiome metagenomics bioinformatics viral-genomics viral-metagenomics metagenome-assembled-genomes

Created 2019-02-11

865 commits to master branch, last one 5 months ago

metaGEM franciscozorrilla

37

176

mit

5

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

mags snakemake metabolism microbiome metagenomics bioinformatics gut-microbiome systems-biology metabolic-models microbial-ecology metabolic-modeling computational-biology flux-balance-analysis genome-scale-metabolic-model metagenome-assembled-genomes

Created 2018-06-14

665 commits to master branch, last one 5 months ago

RaPDTool ayixon

87

111

mit

9

Rapid Profiling and Deconvolution Tool for Metagenomes

metagenomics bioinformatics microbial-taxonomy metagenome-assembled-genomes

Created 2021-10-14

131 commits to 2.1.0 branch, last one 2 months ago

mmlong2 Serka-M

3

33

gpl-3.0

1

Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes

pacbio nanopore microbiome metagenomics bioinformatics microbial-genomics long-read-sequencing metagenome-assembled-genomes

Created 2022-11-29

216 commits to main branch, last one 8 days ago