2 results found Sort:

franciscozorrilla
metaGEM franciscozorrilla
43
206
mit
5
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
mags snakemake metabolism microbiome metagenomics bioinformatics gut-microbiome systems-biology metabolic-models microbial-ecology metabolic-modeling computational-biology flux-balance-analysis genome-scale-metabolic-model metagenome-assembled-genomes
Created 2018-06-14
669 commits to master branch, last one 4 months ago
cnapy-org
CNApy cnapy-org
7
46
apache-2.0
3
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, ...
fba fva sbml cobra bioinformatics systems-biology flux-variability metabolic-models metabolic-networks computational-biology flux-balance-analysis metabolic-engineering constraint-programming stoichiometric-modeling metabolic-reconstruction constraint-based-analysis constraint-based-modeling constraint-based-reconstruction
Created 2019-11-15
777 commits to master branch, last one 6 days ago