5 results found Sort:

opencobra
cobratoolbox opencobra
311
247
other
33
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
cobra tutorial gap-filling metabolomics cobra-toolbox reconstruction transcriptomics human-metabolism metabolic-models strain-engineering microbiome-analysis metabolic-engineering omics-data-integration metabolic-reconstruction constraint-based-modeling
Created 2012-11-02
9,098 commits to master branch, last one 2 days ago
SysBioChalmers
RAVEN SysBioChalmers
52
100
other
13
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
sysbio gap-filling systems-biology human-metabolism metabolic-models genome-scale-models metabolic-engineering metabolic-reconstruction constraint-based-modeling
Created 2016-04-05
1,955 commits to main branch, last one about a month ago
johon-lituobang
MM johon-lituobang
26
60
unknown
9
Infer metabolic directions from moment differences of mass-weighted intensity distributions
moment moments annotations mass-spectra metabolomics mass-spectrum metabolic-models mass-spectrometry metabolic-network metabolic-networks metabolic-pathways metabolic-engineering mass-spectrometry-data metabolic-flux-analysis
Created 2023-11-25
23 commits to main branch, last one 7 months ago
brsynth
RetroPathRL brsynth
17
48
mit
4
Reinforcement Learning based bioretrosynthesis tool
synbio retropath synthetic-biology metabolic-engineering
Created 2019-10-31
39 commits to master branch, last one 3 months ago
hiyama341
teemi hiyama341
3
34
mit
2
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platfor...
bio-cad synthetic-biology metabolic-engineering ht-strain-construction machine-learning-guided-engineering-of-biology
Created 2023-01-30
238 commits to main branch, last one about a month ago