6 results found Sort:

opencobra
cobratoolbox opencobra
323
257
other
33
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
cobra tutorial gap-filling metabolomics cobra-toolbox reconstruction transcriptomics human-metabolism metabolic-models strain-engineering microbiome-analysis metabolic-engineering omics-data-integration metabolic-reconstruction constraint-based-modeling
Created 2012-11-02
9,503 commits to master branch, last one 2 days ago
SysBioChalmers
RAVEN SysBioChalmers
54
107
other
12
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
sysbio gap-filling systems-biology human-metabolism metabolic-models genome-scale-models metabolic-engineering metabolic-reconstruction constraint-based-modeling
Created 2016-04-05
1,973 commits to main branch, last one 2 months ago
brsynth
RetroPathRL brsynth
18
51
mit
3
Reinforcement Learning based bioretrosynthesis tool
synbio retropath synthetic-biology metabolic-engineering
Created 2019-10-31
39 commits to master branch, last one 8 months ago
cnapy-org
CNApy cnapy-org
7
51
apache-2.0
2
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, ...
fba fva sbml cobra bioinformatics systems-biology flux-variability metabolic-models metabolic-networks computational-biology flux-balance-analysis metabolic-engineering constraint-programming stoichiometric-modeling metabolic-reconstruction constraint-based-analysis constraint-based-modeling constraint-based-reconstruction
Created 2019-11-15
780 commits to master branch, last one 11 days ago
johon-lituobang
MM johon-lituobang
14
47
unknown
8
Infer metabolic directions from moment differences of mass-weighted intensity distributions
moment moments annotations mass-spectra metabolomics mass-spectrum metabolic-models mass-spectrometry metabolic-network metabolic-networks metabolic-pathways metabolic-engineering mass-spectrometry-data metabolic-flux-analysis
Created 2023-11-25
23 commits to main branch, last one about a year ago
hiyama341
teemi hiyama341
3
40
mit
2
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platfor...
bio-cad synthetic-biology metabolic-engineering ht-strain-construction machine-learning-guided-engineering-of-biology
Created 2023-01-30
251 commits to main branch, last one 20 days ago