5 results found Sort:

opencobra
cobratoolbox opencobra
323
257
other
32
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
cobra tutorial gap-filling metabolomics cobra-toolbox reconstruction transcriptomics human-metabolism metabolic-models strain-engineering microbiome-analysis metabolic-engineering omics-data-integration metabolic-reconstruction constraint-based-modeling
Created 2012-11-02
9,503 commits to master branch, last one 4 days ago
jotech
gapseq jotech
35
174
gpl-3.0
9
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
r cobra curation gap-filling metabolic-models metabolic-pathways metabolic-reconstruction
Created 2017-11-01
1,465 commits to master branch, last one 5 days ago
opencobra
memote opencobra
31
131
apache-2.0
19
memote – the genome-scale metabolic model test suite
sbml cobra unit-testing standardization metabolic-models metabolic-reconstruction
Created 2016-05-13
893 commits to develop branch, last one about a year ago
SysBioChalmers
RAVEN SysBioChalmers
54
107
other
12
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
sysbio gap-filling systems-biology human-metabolism metabolic-models genome-scale-models metabolic-engineering metabolic-reconstruction constraint-based-modeling
Created 2016-04-05
1,973 commits to main branch, last one 2 months ago
cnapy-org
CNApy cnapy-org
7
51
apache-2.0
2
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, ...
fba fva sbml cobra bioinformatics systems-biology flux-variability metabolic-models metabolic-networks computational-biology flux-balance-analysis metabolic-engineering constraint-programming stoichiometric-modeling metabolic-reconstruction constraint-based-analysis constraint-based-modeling constraint-based-reconstruction
Created 2019-11-15
780 commits to master branch, last one 12 days ago