5 results found Sort:

opencobra
cobratoolbox opencobra
317
252
other
33
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
cobra tutorial gap-filling metabolomics cobra-toolbox reconstruction transcriptomics human-metabolism metabolic-models strain-engineering microbiome-analysis metabolic-engineering omics-data-integration metabolic-reconstruction constraint-based-modeling
Created 2012-11-02
9,302 commits to master branch, last one 15 days ago
jotech
gapseq jotech
33
161
gpl-3.0
10
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
r cobra curation gap-filling metabolic-models metabolic-pathways metabolic-reconstruction
Created 2017-11-01
1,456 commits to master branch, last one 4 days ago
opencobra
memote opencobra
28
128
apache-2.0
20
memote – the genome-scale metabolic model test suite
sbml cobra unit-testing standardization metabolic-models metabolic-reconstruction
Created 2016-05-13
893 commits to develop branch, last one 10 months ago
SysBioChalmers
RAVEN SysBioChalmers
52
101
other
13
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
sysbio gap-filling systems-biology human-metabolism metabolic-models genome-scale-models metabolic-engineering metabolic-reconstruction constraint-based-modeling
Created 2016-04-05
1,967 commits to main branch, last one about a month ago
cnapy-org
CNApy cnapy-org
7
46
apache-2.0
3
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, ...
fba fva sbml cobra bioinformatics systems-biology flux-variability metabolic-models metabolic-networks computational-biology flux-balance-analysis metabolic-engineering constraint-programming stoichiometric-modeling metabolic-reconstruction constraint-based-analysis constraint-based-modeling constraint-based-reconstruction
Created 2019-11-15
776 commits to master branch, last one 2 days ago