5 results found Sort:

opencobra
cobratoolbox opencobra
320
254
other
33
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
cobra tutorial gap-filling metabolomics cobra-toolbox reconstruction transcriptomics human-metabolism metabolic-models strain-engineering microbiome-analysis metabolic-engineering omics-data-integration metabolic-reconstruction constraint-based-modeling
Created 2012-11-02
9,302 commits to master branch, last one about a month ago
jotech
gapseq jotech
33
165
gpl-3.0
10
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
r cobra curation gap-filling metabolic-models metabolic-pathways metabolic-reconstruction
Created 2017-11-01
1,460 commits to master branch, last one 28 days ago
opencobra
memote opencobra
28
129
apache-2.0
20
memote – the genome-scale metabolic model test suite
sbml cobra unit-testing standardization metabolic-models metabolic-reconstruction
Created 2016-05-13
893 commits to develop branch, last one 12 months ago
SysBioChalmers
RAVEN SysBioChalmers
54
105
other
13
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
sysbio gap-filling systems-biology human-metabolism metabolic-models genome-scale-models metabolic-engineering metabolic-reconstruction constraint-based-modeling
Created 2016-04-05
1,973 commits to main branch, last one 12 days ago
cnapy-org
CNApy cnapy-org
7
47
apache-2.0
3
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, ...
fba fva sbml cobra bioinformatics systems-biology flux-variability metabolic-models metabolic-networks computational-biology flux-balance-analysis metabolic-engineering constraint-programming stoichiometric-modeling metabolic-reconstruction constraint-based-analysis constraint-based-modeling constraint-based-reconstruction
Created 2019-11-15
777 commits to master branch, last one about a month ago