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The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

cobra tutorial gap-filling metabolomics cobra-toolbox reconstruction transcriptomics human-metabolism metabolic-models strain-engineering microbiome-analysis metabolic-engineering omics-data-integration metabolic-reconstruction constraint-based-modeling

Created 2012-11-02

9,538 commits to master branch, last one 18 days ago

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unknown

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Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

dada2 omics qiime2 16s-rrna phyloseq microbiome statistics metagenomes visualization microbiome-data longitudinal-data amplicon-sequencing microbiome-analysis microbiome-workflow metagenomic-analysis omics-data-integration

Created 2023-07-21

729 commits to main branch, last one a day ago

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gpl-3.0

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Metabolic Engineering Workbench

python strain modeling simulation optimization kinetic-modeling microbial-communities omics-data-integration

Created 2020-03-05

632 commits to master branch, last one 10 months ago