Search Results - RepositoryStats

mosdepth brentp

100

702

mit

22

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

nim wgs depth exome genome coverage nim-lang sequencing hacktoberfest

Created 2017-08-24

234 commits to master branch, last one 2 months ago

WholeGenomeSequencing-WGS flowhub-team

52

242

mit

43

Whole Genome Sequencing analysis, WGS analysis

wes wgs genome bioinfomatics bioinformatics-pipeline whole-genome-sequencing

Created 2023-06-25

39 commits to main branch, last one about a year ago

platon oschwengers

15

111

gpl-3.0

6

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

ngs wgs contigs assembly bacteria plasmids microbiology bioinformatics

Created 2019-06-19

195 commits to main branch, last one about a year ago

raredisease nf-core

34

90

mit

158

Call and score variants from WGS/WES of rare disease patients.

snv wes wgs nf-core nextflow pipeline workflow diagnostics rare-disease variant-calling variant-annotation structural-variants

Created 2021-06-21

2,676 commits to master branch, last one 2 months ago

referenceseeker oschwengers

5

89

gpl-3.0

6

Rapid determination of appropriate reference genomes.

ani wgs mash refseq microbiology bioinformatics reference-genomes

Created 2018-11-01

219 commits to main branch, last one 10 months ago

sv-callers GooglingTheCancerGenome

35

77

apache-2.0

4

Snakemake-based workflow for detecting structural variants in genomic data

wgs workflow snakemake sv-calling bioinformatics cancer-genomics hpc-applications somatic-variants germline-variants structural-variants

Created 2017-04-10

474 commits to master branch, last one 9 months ago

sns igordot

26

64

mit

8

Analysis pipelines for genomic sequencing data

dna nyu wes wgs rrbs wgbs rna-seq analysis atac-seq genomics illumina pipeline sequencing bioinformatics

Created 2016-08-24

173 commits to main branch, last one about a month ago

Cyrius Illumina

5

49

other

12

A tool to genotype CYP2D6 with WGS data

wgs cyp2d6 pharmacogenomics

Created 2020-04-30

30 commits to master branch, last one about a year ago