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47

232

mit

8

:pencil2: A versatile DNA sequence optimizer

synbio bioinformatics sequence-design dna-optimization synthetic-biology codon-optimization

Created 2017-09-07

489 commits to master branch, last one 10 days ago

16

136

apache-2.0

4

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

codon biotechnology deep-learning bioinformatics codon-optimizer gene-expression machine-learning synthetic-biology codon-optimization computational-biology

Created 2024-05-24

256 commits to main branch, last one 6 days ago

13

65

mit

5

RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8

codon benchmark deep-learning codon-optimization

Created 2021-06-15

109 commits to main branch, last one 2 years ago

1

30

other

5

A Go package for designing DNA.

go sam fasta fastq pileup synbio genbank plasmids goldengate codon-usage dna-barcode dna-folding rna-folding bioinformatics molecular-biology synthetic-biology codon-optimization genetic-engineering computational-biology

Created 2023-12-07

552 commits to main branch, last one 4 months ago