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deepbgc Merck

27

127

mit

10

BGC Detection and Classification Using Deep Learning

python deepbgc pfam2vec deep-learning natural-products synthetic-biology bidirectional-lstm biosynthetic-gene-clusters

Created 2018-12-17

164 commits to master branch, last one about a year ago

funcscan nf-core

20

74

mit

97

(Meta-)genome screening for functional and natural product gene sequences

Created 2021-12-13

1,606 commits to master branch, last one 2 months ago

BiG-SCAPE medema-group

27

73

agpl-3.0

4

Similarity networks of biosynthetic gene clusters

bioinformatics biosynthetic-gene-clusters

Created 2021-11-29

460 commits to master branch, last one 8 months ago

GECCO zellerlab

7

60

gpl-3.0

5

GEne Cluster prediction with COnditional random fields.

python genomics metagenomics bioinformatics natural-products secondary-metabolites biosynthetic-gene-clusters

Created 2021-01-11

1,067 commits to master branch, last one 6 months ago

zol Kalan-Lab

4

49

bsd-3-clause

2

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

bgc phage genomics detection evolution metagenomics gene-clusters visualization bioinformatics comparative-genomics mobile-genetic-elements biosynthetic-gene-clusters

Created 2022-12-27

408 commits to main branch, last one 4 days ago

lsaBGC Kalan-Lab

4

37

bsd-3-clause

4

lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

bgc genomics bioinformatics evolutionary-analysis biosynthetic-gene-clusters

Created 2021-02-12

1,361 commits to main branch, last one 3 months ago

bgcflow NBChub

9

35

mit

3

Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)

genome-analysis genome-annotation pangenome-pipeline biosynthetic-gene-clusters

Created 2021-09-13

804 commits to main branch, last one 2 months ago