6 results found Sort:

Merck
deepbgc Merck
27
127
mit
10
BGC Detection and Classification Using Deep Learning
python deepbgc pfam2vec deep-learning natural-products synthetic-biology bidirectional-lstm biosynthetic-gene-clusters
Created 2018-12-17
164 commits to master branch, last one 12 months ago
nf-core
funcscan nf-core
20
74
mit
98
(Meta-)genome screening for functional and natural product gene sequences
amp amr arg bgc contigs nf-core assembly function nextflow pipeline workflow screening metagenomics bioinformatics natural-products antibiotic-resistance secondary-metabolites antimicrobial-peptides biosynthetic-gene-clusters antimicrobial-resistance-genes
Created 2021-12-13
1,606 commits to master branch, last one 2 months ago
medema-group
BiG-SCAPE medema-group
26
69
agpl-3.0
4
Similarity networks of biosynthetic gene clusters
bioinformatics biosynthetic-gene-clusters
Created 2021-11-29
460 commits to master branch, last one 7 months ago
zellerlab
GECCO zellerlab
7
60
gpl-3.0
5
GEne Cluster prediction with COnditional random fields.
python genomics metagenomics bioinformatics natural-products secondary-metabolites biosynthetic-gene-clusters
Created 2021-01-11
1,067 commits to master branch, last one 6 months ago
Kalan-Lab
zol Kalan-Lab
4
49
bsd-3-clause
2
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
bgc phage genomics detection evolution metagenomics gene-clusters bioinformatics comparative-genomics mobile-genetic-elements biosynthetic-gene-clusters
Created 2022-12-27
378 commits to main branch, last one 8 days ago
Kalan-Lab
lsaBGC Kalan-Lab
4
37
bsd-3-clause
4
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
bgc genomics bioinformatics evolutionary-analysis biosynthetic-gene-clusters
Created 2021-02-12
1,361 commits to main branch, last one 3 months ago