7 results found Sort:

tanghaibao
jcvi tanghaibao
189
772
bsd-2-clause
36
Python library to facilitate genome assembly, annotation, and comparative genomics
blast allmaps synteny assembly genomics genetic-maps bioinformatics variant-calling genome-sequencing sequence-alignments comparative-genomics
Created 2010-12-01
3,040 commits to main branch, last one 18 days ago
tariqdaouda
pyGeno tariqdaouda
50
314
apache-2.0
25
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bed gtf vcf snps cancer genome biology ensembl genomes medical genomics medicine csv-parser proteomics bioinformatics cancer-genomes genome-browser cancer-genomics genome-annotation genome-sequencing
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
ga4gh
benchmarking-tools ga4gh
47
193
apache-2.0
53
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
ga4gh genomics benchmarking variant-calls standardization genome-sequencing reference-materials
Created 2015-10-21
77 commits to master branch, last one 4 years ago
broadinstitute
viral-ngs broadinstitute
67
190
other
30
Viral genomics analysis pipelines
bam fastq viral genome genomics illumina viral-ngs genome-assembly variant-calling genome-sequencing variant-annotations
Created 2014-09-25
3,233 commits to master branch, last one 3 months ago
crazyhottommy
DNA-seq-analysis crazyhottommy
61
142
unknown
14
DNA sequencing analysis notes from Ming Tang
cancer-genomes genome-sequencing somatic-mutations
Created 2015-08-28
246 commits to master branch, last one about a year ago
gavinha
TitanCNA gavinha
37
94
gpl-3.0
3
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
hmm 10x-genomics genome-sequencing tumor-heterogeneity copy-number-variation
Created 2015-01-21
292 commits to master branch, last one 3 years ago
lynnlangit
TeamTeri lynnlangit
17
53
unknown
11
Bioinformatics on GCP, AWS or Azure
aws gcp gatk azure variants variant-calls bioinformatics cancer-genomics genome-analysis genome-sequencing genomics-analysis
Created 2016-10-04
561 commits to master branch, last one 6 months ago