Trending repositories for topic computational-biology
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
COBRApy is a package for constraint-based modeling of metabolic networks.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
COBRApy is a package for constraint-based modeling of metabolic networks.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
Mixed continous/categorical flow-matching model for de novo molecule generation.
A list of schools and researchers in computational neuroscience
A publicly-editable collection of open computational neuroscience resources
COBRApy is a package for constraint-based modeling of metabolic networks.
Interactive network visualization in Python and Dash, powered by Cytoscape.js
A comprehensive library for computational molecular biology
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, p...
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Mixed continous/categorical flow-matching model for de novo molecule generation.
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, p...
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
A publicly-editable collection of open computational neuroscience resources
COBRApy is a package for constraint-based modeling of metabolic networks.
A list of schools and researchers in computational neuroscience
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
A comprehensive library for computational molecular biology
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
Mixed continous/categorical flow-matching model for de novo molecule generation.
A list of schools and researchers in computational neuroscience
A comprehensive library for computational molecular biology
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
COBRApy is a package for constraint-based modeling of metabolic networks.
A publicly-editable collection of open computational neuroscience resources
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
Interactive network visualization in Python and Dash, powered by Cytoscape.js
An interoperable Python framework for biomolecular simulation.
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
Mixed continous/categorical flow-matching model for de novo molecule generation.
A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
An interoperable Python framework for biomolecular simulation.
Code for our Nature Scientific Reports paper "A universal framework for accurate and efficient geometric deep learning of molecular systems"
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
A comprehensive library for computational molecular biology
A list of schools and researchers in computational neuroscience
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
A publicly-editable collection of open computational neuroscience resources
Mixed continous/categorical flow-matching model for de novo molecule generation.
DANCE: a deep learning library and benchmark platform for single-cell analysis
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
Mixed continous/categorical flow-matching model for de novo molecule generation.
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
An interoperable Python framework for biomolecular simulation.
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
Code for our Nature Scientific Reports paper "A universal framework for accurate and efficient geometric deep learning of molecular systems"
A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
A curated list of awesome computational cryo-EM methods.
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
Graph neural networks for molecular machine learning. Implemented and compatible with TensorFlow and Keras.