Trending repositories for topic computational-biology
Mixed continous/categorical flow-matching model for de novo molecule generation.
A list of schools and researchers in computational neuroscience
A publicly-editable collection of open computational neuroscience resources
Mixed continous/categorical flow-matching model for de novo molecule generation.
A list of schools and researchers in computational neuroscience
A publicly-editable collection of open computational neuroscience resources
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
A list of schools and researchers in computational neuroscience
Democratizing ML-powered DNA analysis through efficient on-device computation and interpretive tools.
A publicly-editable collection of open computational neuroscience resources
This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles
Mixed continous/categorical flow-matching model for de novo molecule generation.
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles
Democratizing ML-powered DNA analysis through efficient on-device computation and interpretive tools.
Mixed continous/categorical flow-matching model for de novo molecule generation.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
A list of schools and researchers in computational neuroscience
A publicly-editable collection of open computational neuroscience resources
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
A comprehensive library for computational molecular biology
A list of schools and researchers in computational neuroscience
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Mixed continous/categorical flow-matching model for de novo molecule generation.
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
A publicly-editable collection of open computational neuroscience resources
An interoperable Python framework for biomolecular simulation.
COBRApy is a package for constraint-based modeling of metabolic networks.
Democratizing ML-powered DNA analysis through efficient on-device computation and interpretive tools.
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Mixed continous/categorical flow-matching model for de novo molecule generation.
This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles
An interoperable Python framework for biomolecular simulation.
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Democratizing ML-powered DNA analysis through efficient on-device computation and interpretive tools.
A curated list of awesome computational cryo-EM methods.
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
A comprehensive library for computational molecular biology
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
A list of schools and researchers in computational neuroscience
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
A comprehensive library for computational molecular biology
A list of schools and researchers in computational neuroscience
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
A publicly-editable collection of open computational neuroscience resources
Mixed continous/categorical flow-matching model for de novo molecule generation.
DANCE: a deep learning library and benchmark platform for single-cell analysis
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Mixed continous/categorical flow-matching model for de novo molecule generation.
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
An interoperable Python framework for biomolecular simulation.
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
Code for our Nature Scientific Reports paper "A universal framework for accurate and efficient geometric deep learning of molecular systems"
A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles
A curated list of awesome computational cryo-EM methods.
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.