9 results found Sort:

rdk
p2rank rdk
34
242
mit
9
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
pdb java mmcif pymol groovy ligand p2rank proteins binding-sites random-forest bioinformatics drug-discovery protein-surface machine-learning protein-structure virtual-screening molecular-structures protein-ligand-docking structural-bioinformatics protein-ligand-interactions
Created 2016-09-25
1,622 commits to develop branch, last one 3 days ago
pymodproject
pymod pymodproject
18
71
lgpl-2.1
9
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
pymol pymol-plugin bioinformatics homology-modeling protein-sequences protein-structures sequence-alignments similarity-searches structural-alignments
Created 2016-04-04
74 commits to master branch, last one 4 months ago
MooersLab
pymolshortcuts MooersLab
17
67
mit
2
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functio...
pdb pml pymol aliases scripting shortcuts agile-pymol image-making pymol-plugin pymol-python figure-making startup-script agile-programming molecular-artwork molecular-graphics biomolecular-artwork efficient-programming ergonomic-keyword-use structural-bioinformatics protein-structure-analysis
Created 2018-07-22
127 commits to master branch, last one 4 months ago
paiardin
DockingPie paiardin
12
63
gpl-3.0
4
A Consensus Docking Plugin for PyMOL
pymol ligand molecular pymol-plugin pymol-extension molecular-docking molecular-dynamics molecular-modeling
Created 2022-02-14
134 commits to main branch, last one 3 months ago
cgohlke
pymol-open-source-wheels cgohlke
4
63
unknown
4
Pymol-open-source wheels for Python on Windows
pymol python wheels windows pymol-python
Created 2023-01-04
11 commits to main branch, last one 7 days ago
cbalbin-bio
pymol-color-alphafold cbalbin-bio
22
62
mit
2
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
pymol alphafold alphafold2 pymol-plugin bioinformatics protein-structure structural-biology computational-biology
Created 2021-11-16
7 commits to master branch, last one 2 years ago
BGI-SynBio
PyMOL-PUB BGI-SynBio
2
62
gpl-3.0
1
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
pymol matplotlib pymol-extension manuscript-figures structure-alignment matplotlib-extension structure-clustering
Created 2022-09-29
113 commits to main branch, last one 4 months ago
Valdes-Tresanco-MS
AMDock Valdes-Tresanco-MS
16
60
gpl-3.0
3
(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
vina pymol amdock docking scoring autodock autodock4zn
Created 2018-02-20
310 commits to master branch, last one about a year ago
Valdes-Tresanco-MS
AMDock-win Valdes-Tresanco-MS
20
60
gpl-3.0
4
(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
vina pymol amdock docking autodock4 autodock4zn
Created 2018-09-18
464 commits to master branch, last one 2 years ago