12 results found Sort:

lucidrains
alphafold2 lucidrains
260
1.6k
mit
64
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
deep-learning protein-folding attention-mechanism artificial-intelligence
Created 2020-12-01
538 commits to main branch, last one 2 years ago
PaddlePaddle
PaddleHelix PaddlePaddle
227
1.0k
other
26
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
ddi dti ppi biocomputing deeplearning graph-networks protein-design molecule-design protein-docking protein-folding machine-learning representation-learning rna-structure-prediction self-supervised-learning protein-structure-prediction
Created 2020-11-21
864 commits to dev branch, last one about a month ago
hpcaitech
FastFold hpcaitech
86
576
apache-2.0
17
Optimizing AlphaFold Training and Inference on GPU Clusters
gpu cuda pytorch evoformer alphafold2 parallelism habana-gaudi protein-folding protein-structure
Created 2022-02-27
103 commits to main branch, last one about a year ago
RosettaCommons
PyRosetta.notebooks RosettaCommons
153
504
mit
330
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
dna rosetta pyrosetta google-colab protein-design protein-docking protein-folding jupyter-notebook rna-structure-prediction protein-structure-prediction
Created 2019-05-24
595 commits to master branch, last one 4 months ago
lucidrains
equiformer-pytorch lucidrains
24
252
mit
13
Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
molecules equivariance transformers deep-learning protein-folding attention-mechanisms artificial-intelligence
Created 2022-10-29
172 commits to main branch, last one 4 days ago
lucidrains
invariant-point-attention lucidrains
11
151
mit
5
Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
deep-learning protein-folding artificial-intelligence
Created 2021-07-16
41 commits to main branch, last one 2 years ago
lucidrains
tr-rosetta-pytorch lucidrains
10
80
mit
4
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
deep-learning protein-design protein-folding artificial-intelligence
Created 2021-02-04
22 commits to main branch, last one 3 years ago
instadeepai
manyfold instadeepai
10
75
other
13
🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
jax python research deep-learning bioinformatics protein-folding protein-structure
Created 2022-08-31
5 commits to master branch, last one 2 years ago
nf-core
proteinfold nf-core
42
64
mit
163
Protein 3D structure prediction pipeline
nf-core nextflow pipeline workflow alphafold2 protein-folding protein-sequences protein-structure protein-fold-prediction
Created 2022-03-03
767 commits to master branch, last one 4 months ago
instadeepai
FrameDiPT instadeepai
6
52
other
5
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
tcr alphafold2 inpainting loop-design protein-folding diffusion-models generative-model protein-structure
Created 2023-11-24
4 commits to main branch, last one 11 months ago
torchmd
torchmd-cg torchmd
10
42
mit
7
Example to fit parameters and run CG simulations using TorchMD and Schnet
pytorch protein-folding machine-learning coarse-grained-molecular-dynamics
Created 2020-09-23
61 commits to master branch, last one 3 years ago
conradry
prtm conradry
4
30
apache-2.0
1
Deep learning for protein science
deep-learning drug-discovery protein-design protein-folding protein-science
Created 2022-07-31
378 commits to main branch, last one 6 months ago