9 results found Sort:

immunomind
immunarch immunomind
65
306
apache-2.0
14
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
ig bcr tcr rep-seq immunology single-cell airr-analysis ig-repertoire bcr-repertoire bioinformatics immunoglobulin tcr-repertoire b-cell-receptor t-cell-receptor immune-repertoire immunoinformatics repertoire-analysis single-cell-analysis immune-repertoire-data immune-repertoire-analysis
Created 2019-02-26
683 commits to master branch, last one 6 months ago
slowkow
awesome-vdj slowkow
25
202
cc0-1.0
15
📚 Tools and databases for analyzing HLA and VDJ genes.
bcr hla tcr vdj antibody hla-typing immunology awesome-list hla-database bioinformatics b-cell-receptor t-cell-receptor
Created 2020-01-08
73 commits to master branch, last one 4 months ago
sidhomj
DeepTCR sidhomj
40
113
mit
12
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
tcr immunology repertoire deep-learning tcr-repertoire adaptive-immunity
Created 2018-11-03
1,005 commits to master branch, last one 2 years ago
houseofcat
turbocookedrabbit houseofcat
20
107
mit
3
A user friendly RabbitMQ library written in Golang.
go tcr golang rabbitmq cookedrabbit
Created 2019-09-01
293 commits to master branch, last one 2 years ago
uio-bmi
immuneML uio-bmi
29
60
agpl-3.0
13
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
bcr tcr airr benchmarking classification immune-repertoire adaptive-immune-receptors machine-learning-analysis
Created 2020-09-28
1,212 commits to master branch, last one 3 days ago
JamieHeather
stitchr JamieHeather
10
50
mit
4
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
tcr immunology bioinformatics-tool
Created 2018-11-09
131 commits to main branch, last one 6 months ago
instadeepai
FrameDiPT instadeepai
6
49
other
5
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
tcr alphafold2 inpainting loop-design protein-folding diffusion-models generative-model protein-structure
Created 2023-11-24
4 commits to main branch, last one 8 months ago
wukevin
tcr-bert wukevin
7
47
apache-2.0
1
Large language modeling applied to T-cell receptor (TCR) sequences.
tcr bert machine-learning
Created 2021-11-12
145 commits to main branch, last one 2 years ago
pengxingang
TEIM pengxingang
5
42
mit
2
TEIM: TCR-Epitope Interaction Modeling
tcr tcr-epitope deep-learning
Created 2021-11-04
31 commits to main branch, last one about a year ago