4 results found Sort:

slowkow
awesome-vdj slowkow
25
211
cc0-1.0
15
📚 Tools and databases for analyzing HLA and VDJ genes.
bcr hla tcr vdj antibody hla-typing immunology awesome-list hla-database bioinformatics b-cell-receptor t-cell-receptor
Created 2020-01-08
76 commits to master branch, last one 11 days ago
humanlongevity
HLA humanlongevity
52
105
other
10
xHLA: Fast and accurate HLA typing from short read sequence data
genomics variants hla-typing sequencing variant-calling
Created 2017-06-20
160 commits to master branch, last one 7 years ago
nf-core
hlatyping nf-core
30
63
mit
157
Precision HLA typing from next-generation sequencing data
dna hla rna nf-core nextflow optitype pipeline workflow hla-typing immunology personalized-medicine
Created 2018-07-11
430 commits to master branch, last one 2 years ago
deepomicslab
SpecHLA deepomicslab
9
39
mit
3
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...
loh phase cancer immunity nanopore haplotype hla-typing pacbio-data hla-sequence reads-binning local-assembly allelic-imbalance genotype-frequency loss-of-heterozygosity human-leukocyte-antigens
Created 2021-05-07
337 commits to master branch, last one 2 months ago