3 results found Sort:

zengxiaofei
HapHiC zengxiaofei
9
144
bsd-3-clause
4
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
t2t hi-c yahs salsa 3d-dna allhic genome hifiasm phasing assembly lachesis haplotype chromosome scaffolding
Created 2023-11-09
89 commits to main branch, last one 2 months ago
odelaneau
shapeit5 odelaneau
12
73
mit
4
Segmented HAPlotype Estimation and Imputation Tool
phasing haplotype sequencing bioinformatics
Created 2022-03-14
454 commits to main branch, last one 9 months ago
deepomicslab
SpecHLA deepomicslab
9
39
mit
3
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...
loh phase cancer immunity nanopore haplotype hla-typing pacbio-data hla-sequence reads-binning local-assembly allelic-imbalance genotype-frequency loss-of-heterozygosity human-leukocyte-antigens
Created 2021-05-07
337 commits to master branch, last one 3 months ago