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HapHiC zengxiaofei

9

162

bsd-3-clause

4

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

t2t hi-c yahs salsa 3d-dna allhic genome hifiasm phasing assembly lachesis haplotype chromosome scaffolding

Created 2023-11-09

91 commits to main branch, last one 7 days ago

shapeit5 odelaneau

12

74

mit

4

Segmented HAPlotype Estimation and Imputation Tool

phasing haplotype sequencing bioinformatics

Created 2022-03-14

454 commits to main branch, last one 10 months ago

SpecHLA deepomicslab

10

40

mit

3

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...

loh phase cancer immunity nanopore haplotype hla-typing pacbio-data hla-sequence reads-binning local-assembly allelic-imbalance genotype-frequency loss-of-heterozygosity human-leukocyte-antigens

Created 2021-05-07

337 commits to master branch, last one 4 months ago