2 results found Sort:

nygenome
lancet nygenome
33
154
other
14
Microassembly based somatic variant caller for NGS data
snvs indels debruijn-graph local-assembly cancer-genomics variant-callers somatic-mutations
Created 2016-02-03
172 commits to v1.1.x branch, last one 2 years ago
deepomicslab
SpecHLA deepomicslab
9
39
mit
3
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...
loh phase cancer immunity nanopore haplotype hla-typing pacbio-data hla-sequence reads-binning local-assembly allelic-imbalance genotype-frequency loss-of-heterozygosity human-leukocyte-antigens
Created 2021-05-07
337 commits to master branch, last one 3 months ago