Search Results - RepositoryStats

strelka Illumina

103

366

gpl-3.0

27

Strelka2 germline and somatic small variant caller

snps snvs indels bioinformatics

Created 2016-10-17

3,315 commits to v2.9.x branch, last one 6 years ago

pcgr sigven

48

257

mit

24

Personal Cancer Genome Reporter (PCGR)

vcf snvs tumor cancer somatic clinical interpreter oncology-data annotation-tool cancer-genomics cancer-variants reporting-engine precision-oncology therapeutic-targets annotation-framework copy-number-variation variant-interpretation precision-cancer-medicine

Created 2017-03-20

1,207 commits to main branch, last one 5 months ago

lancet nygenome

33

154

other

13

Microassembly based somatic variant caller for NGS data

snvs indels debruijn-graph local-assembly cancer-genomics variant-callers somatic-mutations

Created 2016-02-03

172 commits to v1.1.x branch, last one 2 years ago

Monopogen KChen-lab

19

93

gpl-3.0

2

SNV calling from single cell sequencing

snvs single-cell somatic-variants germline-variants

Created 2022-04-20

316 commits to main branch, last one 4 months ago

ClairS HKU-BAL

8

82

bsd-3-clause

6

ClairS - a deep-learning method for long-read somatic small variant calling

ont snvs indels pacbio phasing genomics illumina nanopore haplotypes long-reads short-reads deep-learning bioinformatics somatic-variants somatic-mutations long-read-sequencing

Created 2021-07-29

763 commits to main branch, last one 23 days ago

ClairS-TO HKU-BAL

4

59

bsd-3-clause

3

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

ont snvs pacbio tumors genomics illumina nanopore variants long-reads tumor-only deep-learning bioinformatics variant-calling somatic-variants somatic-mutations long-read-sequencing

Created 2023-11-07

182 commits to main branch, last one 3 days ago

gvanno sigven

11

58

unknown

7

Generic human DNA variant annotation pipeline

snv vcf vep gene snvs docker indels vcfanno germline variants workflow singularity annotation-tool variant-annotations annotation-framework disease-gene-association

Created 2017-01-21

98 commits to master branch, last one about a year ago