4 results found Sort:

nf-core
sarek nf-core
423
419
mit
134
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
conda gatk4 cancer nf-core somatic genomics germline nextflow pipeline workflow annotation containers target-panels bioinformatics pre-processing variant-calling reproducible-research whole-exome-sequencing whole-genome-sequencing next-generation-sequencing
Created 2019-04-30
7,940 commits to master branch, last one about a month ago
sigven
pcgr sigven
48
256
mit
24
Personal Cancer Genome Reporter (PCGR)
vcf snvs tumor cancer somatic clinical interpreter oncology-data annotation-tool cancer-genomics cancer-variants reporting-engine precision-oncology therapeutic-targets annotation-framework copy-number-variation variant-interpretation precision-cancer-medicine
Created 2017-03-20
1,207 commits to main branch, last one 3 months ago
OpenGene
MutScan OpenGene
38
149
mit
22
Detect and visualize target mutations by scanning FastQ files directly
ngs fastq cancer somatic variant mutation detection validation visualization bioinformatics
Created 2016-07-23
259 commits to master branch, last one 2 years ago
OpenGene
gencore OpenGene
31
116
mit
13
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
ngs duplex somatic consensus sequencing duplication deduplication bioinformatics deep-sequencing sequencing-error sequencing-noise duplex-sequencing
Created 2018-05-03
112 commits to master branch, last one about a year ago