nf-core / sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Date Created 2019-04-30 (5 years ago)

Commits 7,941 (last one about a month ago)

Stargazers 432 (1 this week)

Watchers 138 (4 this week)

Forks 434

License mit

Ranking

RepositoryStats indexes 630,459 repositories, of these nf-core/sarek is ranked #105,726 (83rd percentile) for total stargazers, and #11,776 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #3/87.

nf-core/sarek is also tagged with popular topics, for these it's ranked: bioinformatics (#98/844), containers (#303/793), workflow (#204/757), pipeline (#88/457), genomics (#39/324), annotation (#44/182)

Other Information

nf-core/sarek has 37 open pull requests on Github, 856 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 288 open issues and 474 closed issues.

There have been 28 releases, the latest one was published on 2025-02-18 (about a month ago) with the name Sarek 3.5.1 - Akkatjåkkå.

Homepage URL: https://nf-co.re/sarek

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5,805 commits on the default branch (master) since jan '22

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updated: 2025-03-23 @ 12:49am, id: 184289291 / R_kgDOCvwICw