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manta Illumina

153

416

gpl-3.0

41

Structural variant and indel caller for mapped sequencing data

indels bioinformatics structural-variation structural-variations

This repository has been archived (exclude archived)

Created 2013-05-30

2,631 commits to master branch, last one 5 years ago

strelka Illumina

105

361

gpl-3.0

28

Strelka2 germline and somatic small variant caller

snps snvs indels bioinformatics

Created 2016-10-17

3,315 commits to v2.9.x branch, last one 5 years ago

svaba walaj

45

238

gpl-3.0

17

Structural variation and indel detection by local assembly

indels variants c-plus-plus assembled-contigs structural-variations

Created 2016-09-15

450 commits to master branch, last one about a month ago

lancet nygenome

33

154

other

14

Microassembly based somatic variant caller for NGS data

snvs indels debruijn-graph local-assembly cancer-genomics variant-callers somatic-mutations

Created 2016-02-03

172 commits to v1.1.x branch, last one 2 years ago

abra2 mozack

9

92

mit

17

ABRA2

dna ngs rna abra indels realigner splice-junctions

Created 2016-08-25

1,383 commits to master branch, last one 3 years ago

ClairS HKU-BAL

7

77

bsd-3-clause

6

ClairS - a deep-learning method for long-read somatic small variant calling

ont snvs indels pacbio phasing genomics illumina nanopore haplotypes long-reads short-reads deep-learning bioinformatics somatic-variants somatic-mutations long-read-sequencing

Created 2021-07-29

762 commits to main branch, last one 22 days ago

gvanno sigven

11

57

unknown

7

Generic human DNA variant annotation pipeline

snv vcf vep gene snvs docker indels vcfanno germline variants workflow singularity annotation-tool variant-annotations annotation-framework disease-gene-association

Created 2017-01-21

98 commits to master branch, last one 10 months ago