13 results found Sort:

milaboratory
mixcr milaboratory
79
339
other
30
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
10x t-cell rep-seq rna-seq antibody immunology sequencing single-cell bioinformatics t-cell-receptor
Created 2015-03-30
3,996 commits to develop branch, last one about a month ago
immunomind
immunarch immunomind
65
314
apache-2.0
14
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
ig bcr tcr rep-seq immunology single-cell airr-analysis ig-repertoire bcr-repertoire bioinformatics immunoglobulin tcr-repertoire b-cell-receptor t-cell-receptor immune-repertoire immunoinformatics repertoire-analysis single-cell-analysis immune-repertoire-data immune-repertoire-analysis
Created 2019-02-26
683 commits to master branch, last one 10 months ago
slowkow
awesome-vdj slowkow
25
217
cc0-1.0
15
📚 Tools and databases for analyzing HLA and VDJ genes.
bcr hla tcr vdj antibody hla-typing immunology awesome-list hla-database bioinformatics b-cell-receptor t-cell-receptor
Created 2020-01-08
76 commits to master branch, last one about a month ago
whitews
FlowKit whitews
47
164
bsd-3-clause
5
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
fcs flowjo python gatingml cytometry fcs-files immunology data-science flow-cytometry flow-cytometry-analysis
Created 2018-06-25
1,599 commits to master branch, last one 15 days ago
mikessh
vdjtools mikessh
40
134
other
21
[REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
stat t-cell rep-seq antibody immunology repertoire bioinformatics t-cell-receptor
Created 2014-06-06
838 commits to master branch, last one 8 months ago
antigenomics
vdjdb-db antigenomics
27
133
other
17
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
t-cell antigen database immunology bioinformatics
Created 2016-01-06
933 commits to master branch, last one about a month ago
greenelab
covid19-review greenelab
81
117
other
13
A collaborative review of the emerging COVID-19 literature. Join the chat here:
virus review manubot covid-19 immunology manuscript sars-cov-2 hacktoberfest
Created 2020-03-20
6,559 commits to master branch, last one 12 months ago
sidhomj
DeepTCR sidhomj
40
115
mit
12
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
tcr immunology repertoire deep-learning tcr-repertoire adaptive-immunity
Created 2018-11-03
1,005 commits to master branch, last one 2 years ago
nf-core
hlatyping nf-core
31
64
mit
156
Precision HLA typing from next-generation sequencing data
dna hla rna nf-core nextflow optitype pipeline workflow hla-typing immunology personalized-medicine
Created 2018-07-11
430 commits to master branch, last one 2 years ago
mikessh
migmap mikessh
20
52
other
10
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
ngs t-cell rep-seq antibody immunology sequencing bioinformatics t-cell-receptor
Created 2014-05-24
412 commits to master branch, last one 3 months ago
dmnfarrell
epitopepredict dmnfarrell
22
51
other
6
Python package and command line tool for epitope prediction
immunology bioinformatics epitope-prediction-methods
Created 2015-01-06
290 commits to master branch, last one 6 months ago
qmarcou
IGoR qmarcou
24
51
gpl-3.0
7
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
igor inference immunology simulation hypermutation recombination
Created 2017-12-25
495 commits to master branch, last one 3 years ago
JamieHeather
stitchr JamieHeather
10
51
mit
4
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
tcr immunology bioinformatics-tool
Created 2018-11-09
131 commits to main branch, last one 10 months ago