Search Results - RepositoryStats

359

1.0k

bsd-3-clause

112

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

hpc wdl cloud ga4gh scala docker executor workflow containers application bioinformatics workflow-execution workflow-description-language

Created 2015-04-17

5,676 commits to develop branch, last one a day ago

toil DataBiosphere

241

909

apache-2.0

54

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

aws cwl wdl mesos slurm python pipeline workflow gridengine kubernetes common-workflow-language workflow-description-language

Created 2015-03-30

6,189 commits to master branch, last one a day ago

wdl openwdl

308

807

bsd-3-clause

86

Specification for the Workflow Description Language (WDL).

wdl cloud openwdl workflow bioinformatics reproducibility reproducible-science

Created 2012-08-01

712 commits to wdl-1.2 branch, last one about a month ago

reapack cfillion

22

343

lgpl-3.0

15

📦 Package manager for REAPER

wdl reaper reapack reaper-plugin package-manager

Created 2015-11-22

1,595 commits to master branch, last one 2 months ago

miniwdl chanzuckerberg

54

187

mit

13

Workflow Description Language developer tools & local runner

wdl workflow-description-language

Created 2018-08-11

888 commits to main branch, last one 2 days ago

UKB_RAP dnanexus

52

158

mit

21

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

wdl gwas ukbiobank

Created 2021-11-01

81 commits to main branch, last one 7 months ago

long-read-pipelines broadinstitute

25

145

bsd-3-clause

15

Long read production pipelines

wdl pipelines long-reads variant-calling de-novo-assembly

Created 2019-05-14

581 commits to main branch, last one 14 days ago

dockstore dockstore

29

124

apache-2.0

20

An app store for scientific workflows, tools, notebooks, and services

cwl wdl docker nextflow workflow dockstore containers bioinformatics

Created 2015-04-03

3,912 commits to develop branch, last one a day ago

tasks biowdl

30

86

mit

6

A collection of reusable WDL tasks. Category:Other

wdl tasks workflow wdl-tasks bioinformatics bioinformatics-pipeline

Created 2018-03-12

2,502 commits to develop branch, last one 8 days ago

workflow-execution-service-schemas ga4gh

39

83

apache-2.0

39

The WES API is a standard way to run and manage portable workflows.

cwl wdl ga4gh workflow

Created 2016-03-29

301 commits to develop branch, last one about a year ago

tibanna 4dn-dcic

28

69

mit

13

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...

aws cwl wdl conda docker pipelines snakemake aws-lambda cwl-workflow wdl-workflow bioinformatics aws-step-function snakemake-workflow

Created 2016-07-14

4,023 commits to master branch, last one 3 months ago

pytest-workflow LUMC

10

67

agpl-3.0

6

Configure workflow/pipeline tests using yaml files.

wdl test yaml pytest miniwdl testing cromwell nextflow pipeline workflow snakemake wdl-devtools pytest-plugin workflow-testing

Created 2018-12-05

1,234 commits to develop branch, last one 9 months ago

cromshell broadinstitute

15

53

bsd-3-clause

28

CLI for interacting with Cromwell servers

cli wdl cromwell workflow bioinformatics

Created 2018-03-29

153 commits to main branch, last one 11 months ago

sprocket stjude-rust-labs

8

49

apache-2.0

6

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

wdl workflow wdl-devtools wdl-workflow bioinformatics workflow-engine bioinformatics-pipeline

Created 2023-12-17

63 commits to main branch, last one a day ago

wdl stjude-rust-labs

26

41

apache-2.0

6

Rust crates for working with Workflow Description Language (WDL) documents.

ngs wdl workflow wdl-workflow bioinformatics workflow-engine next-generation-sequencing

Created 2023-10-30

338 commits to main branch, last one 16 hours ago