13 results found Sort:

broadinstitute
cromwell broadinstitute
353
970
bsd-3-clause
111
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
hpc wdl cloud ga4gh scala docker executor workflow containers application bioinformatics workflow-execution workflow-description-language
Created 2015-04-17
5,544 commits to develop branch, last one 3 days ago
DataBiosphere
toil DataBiosphere
237
878
apache-2.0
54
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
aws cwl wdl mesos slurm python pipeline workflow gridengine kubernetes common-workflow-language workflow-description-language
Created 2015-03-30
6,061 commits to master branch, last one 23 hours ago
openwdl
wdl openwdl
303
748
bsd-3-clause
88
Workflow Description Language - Specification and Implementations
wdl cloud openwdl cromwell workflow bioinformatics reproducibility reproducible-science
Created 2012-08-01
701 commits to wdl-1.2 branch, last one about a month ago
cfillion
reapack cfillion
23
307
lgpl-3.0
16
📦 Package manager for REAPER
wdl reaper reapack reaper-plugin package-manager
Created 2015-11-22
1,582 commits to master branch, last one a day ago
chanzuckerberg
miniwdl chanzuckerberg
51
169
mit
14
Workflow Description Language developer tools & local runner
wdl workflow-description-language
Created 2018-08-11
876 commits to main branch, last one 17 hours ago
broadinstitute
long-read-pipelines broadinstitute
23
125
bsd-3-clause
16
Long read production pipelines
wdl pipelines long-reads variant-calling de-novo-assembly
Created 2019-05-14
519 commits to main branch, last one a day ago
dockstore
dockstore dockstore
27
116
apache-2.0
22
Our VM/Docker sharing infrastructure and management component
cwl wdl docker nextflow workflow dockstore containers bioinformatics
Created 2015-04-03
3,797 commits to develop branch, last one 3 days ago
dnanexus
UKB_RAP dnanexus
43
105
mit
17
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
wdl gwas ukbiobank
Created 2021-11-01
75 commits to main branch, last one 23 days ago
biowdl
tasks biowdl
31
85
mit
7
A collection of reusable WDL tasks. Category:Other
wdl tasks workflow wdl-tasks bioinformatics bioinformatics-pipeline
Created 2018-03-12
2,445 commits to develop branch, last one 9 months ago
ga4gh
workflow-execution-service-schemas ga4gh
38
82
apache-2.0
40
The WES API is a standard way to run and manage portable workflows.
cwl wdl ga4gh workflow
Created 2016-03-29
301 commits to develop branch, last one 9 months ago
4dn-dcic
tibanna 4dn-dcic
27
70
mit
15
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...
aws cwl wdl conda docker pipelines snakemake aws-lambda cwl-workflow wdl-workflow bioinformatics aws-step-function snakemake-workflow
Created 2016-07-14
4,002 commits to master branch, last one 14 days ago
LUMC
pytest-workflow LUMC
9
63
agpl-3.0
7
Configure workflow/pipeline tests using yaml files.
wdl test yaml pytest miniwdl testing cromwell nextflow pipeline workflow snakemake wdl-devtools pytest-plugin workflow-testing
Created 2018-12-05
1,234 commits to develop branch, last one 24 days ago
broadinstitute
cromshell broadinstitute
14
52
bsd-3-clause
29
CLI for interacting with Cromwell servers
cli wdl cromwell workflow bioinformatics
Created 2018-03-29
153 commits to main branch, last one 2 months ago