15 results found Sort:

broadinstitute
cromwell broadinstitute
359
1.0k
bsd-3-clause
111
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
hpc wdl cloud ga4gh scala docker executor workflow containers application bioinformatics workflow-execution workflow-description-language
Created 2015-04-17
5,640 commits to develop branch, last one 24 days ago
DataBiosphere
toil DataBiosphere
240
905
apache-2.0
56
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
aws cwl wdl mesos slurm python pipeline workflow gridengine kubernetes common-workflow-language workflow-description-language
Created 2015-03-30
6,160 commits to master branch, last one 2 days ago
openwdl
wdl openwdl
307
785
bsd-3-clause
88
Workflow Description Language - Specification and Implementations
wdl cloud openwdl cromwell workflow bioinformatics reproducibility reproducible-science
Created 2012-08-01
704 commits to wdl-1.2 branch, last one 3 months ago
cfillion
reapack cfillion
21
331
lgpl-3.0
16
📦 Package manager for REAPER
wdl reaper reapack reaper-plugin package-manager
Created 2015-11-22
1,593 commits to master branch, last one 2 months ago
chanzuckerberg
miniwdl chanzuckerberg
53
179
mit
14
Workflow Description Language developer tools & local runner
wdl workflow-description-language
Created 2018-08-11
879 commits to main branch, last one 5 months ago
dnanexus
UKB_RAP dnanexus
49
143
mit
18
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
wdl gwas ukbiobank
Created 2021-11-01
81 commits to main branch, last one 5 months ago
broadinstitute
long-read-pipelines broadinstitute
24
142
bsd-3-clause
16
Long read production pipelines
wdl pipelines long-reads variant-calling de-novo-assembly
Created 2019-05-14
557 commits to main branch, last one 15 days ago
dockstore
dockstore dockstore
28
122
apache-2.0
22
An app store for scientific workflows, tools, notebooks, and services
cwl wdl docker nextflow workflow dockstore containers bioinformatics
Created 2015-04-03
3,876 commits to develop branch, last one 22 days ago
biowdl
tasks biowdl
29
85
mit
7
A collection of reusable WDL tasks. Category:Other
wdl tasks workflow wdl-tasks bioinformatics bioinformatics-pipeline
Created 2018-03-12
2,452 commits to develop branch, last one about a month ago
ga4gh
workflow-execution-service-schemas ga4gh
38
82
apache-2.0
40
The WES API is a standard way to run and manage portable workflows.
cwl wdl ga4gh workflow
Created 2016-03-29
301 commits to develop branch, last one about a year ago
4dn-dcic
tibanna 4dn-dcic
28
70
mit
15
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...
aws cwl wdl conda docker pipelines snakemake aws-lambda cwl-workflow wdl-workflow bioinformatics aws-step-function snakemake-workflow
Created 2016-07-14
4,023 commits to master branch, last one about a month ago
LUMC
pytest-workflow LUMC
9
67
agpl-3.0
7
Configure workflow/pipeline tests using yaml files.
wdl test yaml pytest miniwdl testing cromwell nextflow pipeline workflow snakemake wdl-devtools pytest-plugin workflow-testing
Created 2018-12-05
1,234 commits to develop branch, last one 7 months ago
broadinstitute
cromshell broadinstitute
15
53
bsd-3-clause
29
CLI for interacting with Cromwell servers
cli wdl cromwell workflow bioinformatics
Created 2018-03-29
153 commits to main branch, last one 9 months ago
stjude-rust-labs
sprocket stjude-rust-labs
2
38
apache-2.0
6
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
wdl workflow wdl-devtools wdl-workflow bioinformatics workflow-engine bioinformatics-pipeline
Created 2023-12-17
48 commits to main branch, last one about a month ago
stjude-rust-labs
wdl stjude-rust-labs
8
32
apache-2.0
6
Rust crates for working with Workflow Description Language (WDL) documents.
ngs wdl workflow wdl-workflow bioinformatics workflow-engine next-generation-sequencing
Created 2023-10-30
294 commits to main branch, last one 9 days ago