4 results found Sort:

moiexpositoalonsolab
grenepipe moiexpositoalonsolab
21
95
gpl-3.0
4
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
snakemake ancient-dna variant-calls pool-sequencing variant-calling snakemake-workflow population-genetics evolve-and-resequence genomic-variant-calling
Created 2020-05-06
589 commits to master branch, last one 13 days ago
4dn-dcic
tibanna 4dn-dcic
28
70
mit
15
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...
aws cwl wdl conda docker pipelines snakemake aws-lambda cwl-workflow wdl-workflow bioinformatics aws-step-function snakemake-workflow
Created 2016-07-14
4,023 commits to master branch, last one about a month ago
felixleopoldo
benchpress felixleopoldo
17
65
gpl-2.0
5
Scalable open-source software to run, develop, and benchmark causal discovery algorithms
causality benchmarking causal-models markov-networks causal-discovery graphical-models machine-learning bayesian-networks snakemake-workflow structure-learning reproducible-research
Created 2020-01-15
1,622 commits to master branch, last one 3 days ago
lachlandeer
snakemake-econ-r lachlandeer
13
63
mit
3
reproducible research project template for R using Renv and snakemake with an econ application
renv workflow economics snakemake reproducibility snakemake-workflow reproducible-research
Created 2018-03-20
326 commits to master branch, last one 2 years ago