Search Results - RepositoryStats

21

93

gpl-3.0

4

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

snakemake ancient-dna variant-calls pool-sequencing variant-calling snakemake-workflow population-genetics evolve-and-resequence genomic-variant-calling

Created 2020-05-06

567 commits to master branch, last one 27 days ago

tibanna 4dn-dcic

28

70

mit

15

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...

aws cwl wdl conda docker pipelines snakemake aws-lambda cwl-workflow wdl-workflow bioinformatics aws-step-function snakemake-workflow

Created 2016-07-14

4,022 commits to master branch, last one 3 months ago

benchpress felixleopoldo

17

64

gpl-2.0

5

A Snakemake workflow to run and benchmark structure learning (a.k.a. causal discovery) algorithms for probabilistic graphical models.

causality benchmarking causal-models markov-networks causal-discovery graphical-models machine-learning bayesian-networks snakemake-workflow structure-learning reproducible-research

Created 2020-01-15

1,445 commits to master branch, last one about a month ago

snakemake-econ-r lachlandeer

13

62

mit

3

reproducible research project template for R using Renv and snakemake with an econ application

renv workflow economics snakemake reproducibility snakemake-workflow reproducible-research

Created 2018-03-20

326 commits to master branch, last one 2 years ago