3 results found Sort:

snakemake-workflows
dna-seq-gatk-variant-calling snakemake-workflows
147
243
mit
10
This Snakemake pipeline implements the GATK best-practices workflow
gatk snakemake sciworkflows reproducibility genomic-variant-calling
Created 2018-06-28
125 commits to main branch, last one 3 years ago
moiexpositoalonsolab
grenepipe moiexpositoalonsolab
21
93
gpl-3.0
4
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
snakemake ancient-dna variant-calls pool-sequencing variant-calling snakemake-workflow population-genetics evolve-and-resequence genomic-variant-calling
Created 2020-05-06
567 commits to master branch, last one about a month ago
snakemake-workflows
dna-seq-varlociraptor snakemake-workflows
40
83
mit
9
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Var...
snakemake sciworkflows varlociraptor reproducibility genomic-variant-calling
Created 2020-01-17
422 commits to master branch, last one 4 days ago