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long-read-pipelines broadinstitute

25

144

bsd-3-clause

16

Long read production pipelines

wdl pipelines long-reads variant-calling de-novo-assembly

Created 2019-05-14

579 commits to main branch, last one 16 hours ago

ggcat algbio

11

81

mit

6

Compacted and colored de Bruijn graph construction and querying

rust sequencing bioinformatics debruijn-graph genome-assembly de-novo-assembly bioinformatics-pipeline

Created 2019-11-20

604 commits to main branch, last one about a month ago

BLEND CMU-SAFARI

4

42

other

11

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applica...

blend minimizers strobemers fuzzy-seeds read-mapping spaced-seeds seed-matching bioinformatics genome-analysis genome-assembly de-novo-assembly read-overlapping

Created 2021-12-12

35 commits to master branch, last one about a year ago