CMU-SAFARI / BLEND

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

Date Created 2021-12-12 (3 years ago)

Commits 35 (last one about a year ago)

Stargazers 42 (0 this week)

Watchers 11 (0 this week)

Forks 4

License other

Ranking

RepositoryStats indexes 622,269 repositories, of these CMU-SAFARI/BLEND is ranked #528,144 (15th percentile) for total stargazers, and #194,436 for total watchers. Github reports the primary language for this repository as C, for repositories using this language it is ranked #20,342/23,004.

CMU-SAFARI/BLEND is also tagged with popular topics, for these it's ranked: bioinformatics (#760/838)

Other Information

CMU-SAFARI/BLEND has Github issues enabled, there are 2 open issues and 5 closed issues.

There have been 1 release, the latest one was published on 2022-11-22 (2 years ago) with the name BLEND-1.0.0.

All Topics

blend minimizers strobemers fuzzy-seeds read-mapping spaced-seeds seed-matching bioinformatics genome-analysis genome-assembly de-novo-assembly read-overlapping

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31 commits on the default branch (master) since jan '22

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The primary language is C but there's also others...

updated: 2025-02-14 @ 06:14am, id: 437586354 / R_kgDOGhUJsg