CMU-SAFARI / BLEND

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

Date Created 2021-12-12 (2 years ago)

Commits 35 (last one about a year ago)

Stargazers 42 (0 this week)

Watchers 12 (0 this week)

Forks 4

License other

Ranking

RepositoryStats indexes 584,777 repositories, of these CMU-SAFARI/BLEND is ranked #502,884 (14th percentile) for total stargazers, and #177,637 for total watchers. Github reports the primary language for this repository as C, for repositories using this language it is ranked #19,506/21,839.

CMU-SAFARI/BLEND is also tagged with popular topics, for these it's ranked: bioinformatics (#725/789)

Other Information

CMU-SAFARI/BLEND has Github issues enabled, there is 1 open issue and 5 closed issues.

There have been 1 release, the latest one was published on 2022-11-22 (2 years ago) with the name BLEND-1.0.0.

All Topics

blend minimizers strobemers fuzzy-seeds read-mapping spaced-seeds seed-matching bioinformatics genome-analysis genome-assembly de-novo-assembly read-overlapping

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31 commits on the default branch (master) since jan '22

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The primary language is C but there's also others...

updated: 2024-10-28 @ 09:22pm, id: 437586354 / R_kgDOGhUJsg