2 results found Sort:

pirovc
ganon pirovc
13
87
mit
4
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...
gtdb ncbi k-mer refseq genbank taxonomy microbiome minimizers bloom-filter metagenomics bioinformatics
Created 2018-08-30
690 commits to master branch, last one 8 months ago
CMU-SAFARI
BLEND CMU-SAFARI
4
42
other
12
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applica...
blend minimizers strobemers fuzzy-seeds read-mapping spaced-seeds seed-matching bioinformatics genome-analysis genome-assembly de-novo-assembly read-overlapping
Created 2021-12-12
35 commits to master branch, last one about a year ago