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39

306

bsd-3-clause

8

CellRank: dynamics from multi-view single-cell data

genetics data-science rna-velocity markov-chains bioinformatics machine-learning manifold-learning single-cell-rna-seq single-cell-genomics cell-fate-transitions trajectory-generation cell-fate-determination fuzzy-clustering-analyses

Created 2020-03-12

2,276 commits to main branch, last one about a month ago

ANANSE vanheeringen-lab

15

76

mit

5

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

grn bioinformatics enhancer-database cell-fate-determination key-transcription-factors

Created 2019-05-22

956 commits to master branch, last one 5 months ago

pyrovelocity pinellolab

5

35

agpl-3.0

7

𝒫robabilistic modeling of RNA velocity ⬱

pyro multiomics rna-splicing rna-velocity transcriptomics single-cell-rna-seq probabilistic-models single-cell-genomics deep-generative-model rna-splicing-analysis single-cell-multiomics cell-fate-determination rna-velocity-estimation probabilistic-programming developmental-trajectories

Created 2022-09-07

231 commits to main branch, last one 9 months ago