CMU-SAFARI / RawHash

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).

Date Created 2023-01-20 (2 years ago)

Commits 46 (last one 5 months ago)

Stargazers 54 (0 this week)

Watchers 7 (0 this week)

Forks 6

License gpl-3.0

Ranking

RepositoryStats indexes 630,443 repositories, of these CMU-SAFARI/RawHash is ranked #465,190 (26th percentile) for total stargazers, and #261,032 for total watchers. Github reports the primary language for this repository as C, for repositories using this language it is ranked #18,283/23,285.

CMU-SAFARI/RawHash is also tagged with popular topics, for these it's ranked: bioinformatics (#670/844), segmentation (#531/675)

Other Information

CMU-SAFARI/RawHash has 1 open pull request on Github, 2 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 3 open issues and 8 closed issues.

There have been 3 releases, the latest one was published on 2024-03-20 (about a year ago) with the name RawHash v2.1.

Homepage URL: https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440

All Topics

rawhash seeding nanopore raw-signal hash-tables read-mapping segmentation contamination nanopore-data bioinformatics nanopore-reads event-detection genome-analysis nanopore-minion nanopore-sequencing relative-abundances nanopore-analysis-pipeline raw-nanopore-signal-analysis

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Recent Commit History

46 commits on the default branch (main) since jan '22

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The primary language is C but there's also others...

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updated: 2025-03-23 @ 11:13am, id: 591438451 / R_kgDOI0Cicw