CMU-SAFARI / RawHash

RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)

Date Created 2023-01-20 (about a year ago)

Commits 36 (last one 24 days ago)

Stargazers 39 (0 this week)

Watchers 8 (0 this week)

Forks 5

License gpl-3.0

Ranking

RepositoryStats indexes 523,840 repositories, of these CMU-SAFARI/RawHash is ranked #473,457 (10th percentile) for total stargazers, and #234,250 for total watchers. Github reports the primary language for this repository as C, for repositories using this language it is ranked #18,495/19,880.

CMU-SAFARI/RawHash is also tagged with popular topics, for these it's ranked: bioinformatics (#673/715), segmentation (#529/566)

Other Information

CMU-SAFARI/RawHash has 1 open pull request on Github, 1 pull request has been merged over the lifetime of the repository.

Github issues are enabled, there are 2 open issues and 2 closed issues.

There have been 3 releases, the latest one was published on 2024-03-20 (2 months ago) with the name RawHash v2.1.

Homepage URL: https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440

All Topics

rawhash seeding nanopore raw-signal hash-tables read-mapping segmentation contamination nanopore-data bioinformatics nanopore-reads event-detection genome-analysis nanopore-minion nanopore-sequencing relative-abundances nanopore-analysis-pipeline raw-nanopore-signal-analysis

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Recent Commit History

36 commits on the default branch (main) since jan '22

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Languages

The primary language is C but there's also others...

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updated: 2024-05-28 @ 02:50am, id: 591438451 / R_kgDOI0Cicw