4 results found Sort:

edgardomortiz
vcf2phylip edgardomortiz
85
307
gpl-3.0
9
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
vcf snps fasta nexus snapp binary phylip diploid haploid outgroup alignment polyploid vcf-files vcf-format convert-snps phylip-matrix phylogenetics phylogenetic-analysis
Created 2017-10-10
102 commits to master branch, last one about a year ago
tanghaibao
allhic tanghaibao
14
60
bsd-3-clause
5
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
hi-c golang contigs genomics lachesis pipeline polyploid heterozygous genome-assembly genetic-algorithm genome-scaffolding inter-contig-links
Created 2017-11-06
347 commits to main branch, last one 3 months ago
OmarOakheart
nPhase OmarOakheart
5
45
gpl-3.0
4
Ploidy agnostic phasing pipeline and algorithm
phasing polyploid bioinformatics bioinformatics-pipeline
Created 2020-03-30
142 commits to master branch, last one about a year ago
wangyibin
CPhasing wangyibin
2
31
unknown
5
C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
hic hi-c hific genome hifi-c pore-c diploid phasing assembly polyploid ultra-long scaffolding genome-assembly genome-assembler haplotype-assembly haplotype-resolved-assembly
Created 2022-07-07
400 commits to main branch, last one 5 days ago