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219

382

other

78

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

maf vcf vep perl isoforms

Created 2013-11-22

366 commits to main branch, last one 3 months ago

63

209

bsd-3-clause-clear

18

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

rna pacbio isoforms discovery polishing clustering

Created 2018-03-05

86 commits to master branch, last one about a month ago

17

50

gpl-3.0

8

Discover differential transcript usage from polyA-captured single cell RNA-seq data

sierra isoforms scrna-seq alternative-splicing alternative-polyadenylation

Created 2019-11-26

323 commits to master branch, last one about a year ago

4

49

other

5

Single cell Nanopore sequencing data for Genotype and Phenotype

isoforms single-cell cell-barcode umi-curation demultiplexing gene-expression rna-seq-pipeline long-read-sequencing nanopore-analysis-pipeline single-nucleotide-variation

Created 2022-09-13

45 commits to v2.0 branch, last one 2 days ago

17

45

mit

6

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

isoforms nextflow pipeline proteomics long-read-sequencing

Created 2020-10-28

402 commits to main branch, last one 2 years ago