4 results found Sort:

mskcc
vcf2maf mskcc
217
375
other
79
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
maf vcf vep perl isoforms
Created 2013-11-22
361 commits to main branch, last one 5 months ago
PacificBiosciences
IsoSeq PacificBiosciences
62
192
bsd-3-clause-clear
20
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
rna pacbio isoforms discovery polishing clustering
Created 2018-03-05
85 commits to master branch, last one 22 days ago
VCCRI
Sierra VCCRI
17
49
gpl-3.0
9
Discover differential transcript usage from polyA-captured single cell RNA-seq data
sierra isoforms scrna-seq alternative-splicing alternative-polyadenylation
Created 2019-11-26
323 commits to master branch, last one about a year ago
gaolabtools
scNanoGPS gaolabtools
2
40
other
5
Single cell Nanopore sequencing data for Genotype and Phenotype
isoforms single-cell cell-barcode umi-curation demultiplexing gene-expression rna-seq-pipeline long-read-sequencing nanopore-analysis-pipeline single-nucleotide-variation
Created 2022-09-13
34 commits to v1.1 branch, last one 2 months ago