5 results found Sort:

mskcc
vcf2maf mskcc
218
378
other
79
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
maf vcf vep perl isoforms
Created 2013-11-22
366 commits to main branch, last one 21 days ago
PacificBiosciences
IsoSeq PacificBiosciences
62
197
bsd-3-clause-clear
20
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
rna pacbio isoforms discovery polishing clustering
Created 2018-03-05
85 commits to master branch, last one 2 months ago
VCCRI
Sierra VCCRI
17
49
gpl-3.0
9
Discover differential transcript usage from polyA-captured single cell RNA-seq data
sierra isoforms scrna-seq alternative-splicing alternative-polyadenylation
Created 2019-11-26
323 commits to master branch, last one about a year ago
gaolabtools
scNanoGPS gaolabtools
4
42
other
5
Single cell Nanopore sequencing data for Genotype and Phenotype
isoforms single-cell cell-barcode umi-curation demultiplexing gene-expression rna-seq-pipeline long-read-sequencing nanopore-analysis-pipeline single-nucleotide-variation
Created 2022-09-13
34 commits to v1.1 branch, last one 3 months ago
sheynkman-lab
Long-Read-Proteogenomics sheynkman-lab
17
41
mit
7
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
isoforms nextflow pipeline proteomics long-read-sequencing
Created 2020-10-28
402 commits to main branch, last one 2 years ago